View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_11 (Length: 478)
Name: NF9182_low_11
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 99 - 462
Target Start/End: Original strand, 21413012 - 21413364
Alignment:
| Q |
99 |
gtgtgcgtcgaaaatacagtttaacaccaattatttaaaaatatgtttaccatctaaagtagttgtactaacttgttacaatactagtaaacannnnnnn |
198 |
Q |
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| T |
21413012 |
gtgtgcgtcgaaaatacagtctaacaccaattatttaaaaatatgtttaccatctaaagtacttgtactaacttgttacaatactagtaaacatgtta-- |
21413109 |
T |
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| Q |
199 |
nggagagagtaatgttagtaacccacgttacgttcgacaaaagaatatatatccacatggcaaaagactaaccaatggatccatagtttagcctagaagt |
298 |
Q |
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| T |
21413110 |
---------ttatgttagtaacccacgttacgttcgacaaaagaatatatatccacatggcaaaagactaaccaatggatccatagtttaccctagaagt |
21413200 |
T |
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| Q |
299 |
gagccacgctcaccaatcacaatcccataatctatatttggggtagcactaggtaggttcgatcaatttcatttagttttttcttctccatatatttctt |
398 |
Q |
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| T |
21413201 |
gagccaccctcaccaatcacaatccaataatctatatttggtgtagcacaaggtaggttccatcaatttcattttgttttttcttctccatatatttctt |
21413300 |
T |
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| Q |
399 |
aggaaaatgtcaaaaacttagtgaatcttaagcatatgataaagtttactagctggcaaattaa |
462 |
Q |
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| T |
21413301 |
aggaaaatgtcaaaaacttagtgaatcttaagcatatgataaagtttactagctggcaaattaa |
21413364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21412883 - 21412941
Alignment:
| Q |
1 |
atttttgcggtggaaactaatggctttgcaatctcaaatatgtcaagtgctctcaaatg |
59 |
Q |
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| T |
21412883 |
atttttgcagtcgaaactaatgactttgcaatctcaaatataccaagtgctctcaaatg |
21412941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 22818208 - 22818175
Alignment:
| Q |
14 |
aaactaatggctttgcaatctcaaatatgtcaag |
47 |
Q |
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| T |
22818208 |
aaactaatggctttgcaatctcaaatatgccaag |
22818175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 23996207 - 23996174
Alignment:
| Q |
15 |
aactaatggctttgcaatctcaaatatgtcaagt |
48 |
Q |
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| T |
23996207 |
aactaatggctttgcaatctcaaatatgccaagt |
23996174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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