View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_15 (Length: 431)
Name: NF9182_low_15
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 10877062 - 10876655
Alignment:
| Q |
1 |
aaagagttttacaggcatacgaaacataagagttgatgcagtcataaataactcgagaaatccactctagtttttggtcttgcattattttcttgttgta |
100 |
Q |
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| T |
10877062 |
aaagagttttacaggcatacgaaacataagagttgatgcagtcataaataactcgagaaatccactctagtttttggtcttgcattattttcttgttgta |
10876963 |
T |
|
| Q |
101 |
ttgggtaagacacataatggtgaaagtgaactattgttctttacccttcttgtttgccccatctttaagaaaccgcgaaaaccaatatgcagaagacttt |
200 |
Q |
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| T |
10876962 |
ttgggtaagacacataatggtgaaagtgaactattgttctttacccttcttgtttgccccatctttaagaaaccgcgaaaaccaatatgcagaagacttt |
10876863 |
T |
|
| Q |
201 |
gggtgcctggtgagtccatttttgtaatctacatagaccaatccgaaacgtttggtataaccttgagcccattcgaagttatccagtaatgaccatgcaa |
300 |
Q |
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| T |
10876862 |
gggtgcctggtgagtccatttttgtaatctacatagaccaatccgaaacgtttggtataaccttgagcccattcgaagttatccagtaatgaccatgcaa |
10876763 |
T |
|
| Q |
301 |
agtgtcctctcacatcagctccatccctgtgcattcaaaatttcaaatgatatacaaaactttaggcgtgtttgattaagattcttattttgtttcgaag |
400 |
Q |
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| T |
10876762 |
agtgtcctctcacatcagctccatccctgtgcatt--------caaatgatatacaaaactttaggcgtgtttgattaagattcttattttgtttcgaag |
10876671 |
T |
|
| Q |
401 |
ttcaaacgattttact |
416 |
Q |
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| T |
10876670 |
tttaaacgattttact |
10876655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 10864992 - 10864721
Alignment:
| Q |
116 |
aatggtgaaagtgaactattgttctttacccttcttgtttgccccatctttaagaaaccgcgaaaaccaatatgcagaagactttgggtgcctggtgagt |
215 |
Q |
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|||| ||||||||||||| | |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
10864992 |
aatgatgaaagtgaactactcttctttacccttcttgtttgtcccatctttcagaaaccgtgaaaaccaatatgcagaagactttgggtgcctagtgagt |
10864893 |
T |
|
| Q |
216 |
ccatttttgtaatctacatagaccaatccgaaacgtttggtataaccttgagcccattcgaagttatccagtaatgaccatgcaaagtgtcctctcacat |
315 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
10864892 |
ccatttttgtaatctacatagaccaatccgaagcgtttggtataaccttgagcccattcgaagttgtccagtaatgaccatgcaaagtatcctctcacat |
10864793 |
T |
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| Q |
316 |
cagctccatccctgtgcattcaaaatttcaaatgatatacaaaactttaggcgtgtttgattaagattcttattttgttt |
395 |
Q |
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| T |
10864792 |
ctgctccatccctgtgcatt--------caaacgatatacaatactttagacatatttgattaagattcttattctgttt |
10864721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 10865106 - 10865057
Alignment:
| Q |
25 |
cataagagttgatgcagtcataaataactcgagaaatccactctagtttt |
74 |
Q |
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||||||| |||||||||| ||||||||||||||| |||||| ||||||| |
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| T |
10865106 |
cataagatttgatgcagtggtaaataactcgagaagtccactatagtttt |
10865057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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