View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_16 (Length: 316)
Name: NF9182_low_16
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 35038957 - 35039256
Alignment:
| Q |
1 |
tggtctagaggataatatgaatcatgtatttatgggttgtgagactttttgtagagtttgggtgttattgcgacattggttggatatacattcaattaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35038957 |
tggtctagaggataatatgaatcatgtatttatgggttgtgagactttttgtagagtttgggtgttattgcgacattggttggatatacattcaattaac |
35039056 |
T |
|
| Q |
101 |
ccctcatatctcactcatcatattgtgcagtttagtacgttaagggactggtctaagaaactaaagtcttctttgcatattgtttgcgttgcgtatgttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35039057 |
ccctcatatctcactcatcatattgtgcagtttagtatgttaagggactg-tctaagaaactaaagtcttctttgcatattgtttgccttgcgtatgttt |
35039155 |
T |
|
| Q |
201 |
gggtgatttagaaggacatgaattcctgttgttttcgacaaaaggaatgattgctcatttggtcgaccaagttaaaatcttatcattttcgtggaggaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35039156 |
gggtgatttagaaggacatgaattcctgttgttttcgacaaaaggaatgattgctcatttggtcgaccaagttaaaatcttatcattttcgtggaggaaa |
35039255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 35039434 - 35039543
Alignment:
| Q |
192 |
cgtatgtttgggtgatttagaaggacatgaattcctgttgttttcgacaaaaggaatgattgctcatttggtcgaccaagttaaaatcttatcattttcg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35039434 |
cgtatgtttgggtgatttagaaggacatgaattcctgttgttttcgacaaaaggaatgattgctcatttggtcgaccaagttaaaatcttatcattttcg |
35039533 |
T |
|
| Q |
292 |
tggaggaaag |
301 |
Q |
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|||||||||| |
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| T |
35039534 |
tggaggaaag |
35039543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 16960809 - 16960992
Alignment:
| Q |
1 |
tggtctagaggataatatgaatcatgtatttatgggttgtgagactttttgtagagtttgggtgttattgcgacattggttggatatacattcaattaac |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||| ||| |||| ||| | ||| ||| ||||| ||||||||||| |||||||||||||||| |
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| T |
16960809 |
tggtctagaggagaatatgaatcatttatttatgggttg--agatttttgatagcgattgagtggtattgtaacattggttgggtatacattcaattaac |
16960906 |
T |
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| Q |
101 |
ccctcatatctcactcatcatattgtgcagtttagtacgttaagggactggtctaagaaactaaagtcttctttgcatattgtttg |
186 |
Q |
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||||||||||| || ||||||||||||| |||||| || || ||| ||||||| ||| ||||||||||||||||||| ||||| |
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| T |
16960907 |
ccctcatatcttaccgatcatattgtgcaatttagtgcgctagggggatggtctatgaatataaagtcttctttgcatatcgtttg |
16960992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 1578306 - 1578519
Alignment:
| Q |
29 |
tttatgggttgtgagactttttgtagagtttgggtgttattgcgacattggttggatatacattcaattaacccctcatatctcactcatcatattgtgc |
128 |
Q |
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||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| | ||||| | ||||||| |||| | | | | ||| |||||||| |
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| T |
1578306 |
tttatgggttgtgagacttttagtagcatttaggtgttattgcgacattggttgggtgtacatcaagttaacccttcat-tttgattgatcttattgtgc |
1578404 |
T |
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| Q |
129 |
agtttagtacgttaagggactggtctaagaaactaaagtcttctttgcatattgtttgcgttgcgtatgtttgggtgatttagaaggacatgaattcctg |
228 |
Q |
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| T |
1578405 |
aaattagtgcattgatggattggtctaagaaaataaag---tctttgcatattatttgccttgcttgtgtttgggtgatttggaaggagagaaatttatg |
1578501 |
T |
|
| Q |
229 |
ttgttttcgacaaaagga |
246 |
Q |
| |
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|| |||| |||||||||| |
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| T |
1578502 |
ttatttttgacaaaagga |
1578519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 1606509 - 1606296
Alignment:
| Q |
29 |
tttatgggttgtgagactttttgtagagtttgggtgttattgcgacattggttggatatacattcaattaacccctcatatctcactcatcatattgtgc |
128 |
Q |
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||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| | ||||| | ||||||| |||| | | | | ||| |||||||| |
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| T |
1606509 |
tttatgggttgtgagacttttagtagcatttaggtgttattgcgacattggttgggtgtacatcaagttaacccttcat-tttgattgatcttattgtgc |
1606411 |
T |
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| Q |
129 |
agtttagtacgttaagggactggtctaagaaactaaagtcttctttgcatattgtttgcgttgcgtatgtttgggtgatttagaaggacatgaattcctg |
228 |
Q |
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| T |
1606410 |
aaattagtgcattgatggattggtctaagaaaataaag---tctttgcatattatttgccttgcttgtgtttgggtgatttggaaggagagaaatttatg |
1606314 |
T |
|
| Q |
229 |
ttgttttcgacaaaagga |
246 |
Q |
| |
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|| |||| |||||||||| |
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| T |
1606313 |
ttatttttgacaaaagga |
1606296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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