View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_18 (Length: 312)
Name: NF9182_low_18
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 33447962 - 33448261
Alignment:
| Q |
13 |
tggtgttaccacagatcagatttctcctccagggagtatccacaaggatagccctgctgcaaaatacttgattgagcatggcgtagatcacaaagacttc |
112 |
Q |
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| T |
33447962 |
tggtgttaccacagatcagatttctcctccagggagtatccacaaggatagccctgctgcaaaatacttgattgagcatggcgtagatcacaaagacttc |
33448061 |
T |
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| Q |
113 |
aattcttatggaagtcgtcgcggaaatcatgaagttatggtaagaggcacatttgccaatatccgccttgtgaacaaacttctgaatggagaagtgggtc |
212 |
Q |
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| T |
33448062 |
aattcttatggaagtcgtcgcggaaatcatgaagttatggtaagaggcacatttgccaatatccgccttgtgaacaaacttctgaatggagaagtgggtc |
33448161 |
T |
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| Q |
213 |
caaaaacagttcacattccaacaggagaaaaaatgacagtgtatgatgcagcaatggttagtattaatatttaacacttggataagcattatgaaaattc |
312 |
Q |
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| T |
33448162 |
caaaaacagttcacattccaacaggagaaaaaatgacagtgtatgatgcagcaatggttagtattaatatttaacacttggataagcattatgaaaattc |
33448261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 17037176 - 17036996
Alignment:
| Q |
54 |
acaaggatagccctgctgcaaaatacttgattgagcatggcgtagatcacaaagacttcaattcttatggaagtcgtcgcggaaatcatgaagttatggt |
153 |
Q |
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| T |
17037176 |
acaaggacagtcctgctgctaaatacctactagagcatggggttgaacgcaaggacttcaattcttatggaagtcgtcggggaaatgatgaggtgatggc |
17037077 |
T |
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| Q |
154 |
aagaggcacatttgccaatatccgccttgtgaacaaacttctgaatggagaagtgggtccaaaaacagttcacattccaac |
234 |
Q |
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| T |
17037076 |
gagggggacttttgccaacattcgtcttgttaacaaactcttaaacggggaagttggccctaagacagttcacattccaac |
17036996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 9098338 - 9098439
Alignment:
| Q |
106 |
agacttcaattcttatggaagtcgtcgcggaaatcatgaagttatggtaagaggcacatttgccaatatccgccttgtgaacaaacttctgaatggagaa |
205 |
Q |
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| T |
9098338 |
agacttcaactcctatggaagtcgccgtggcaacgatgaggtgatggcaagaggaacttttgccaatattcgcattgtgaacaaattcctaaatggagaa |
9098437 |
T |
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| Q |
206 |
gt |
207 |
Q |
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|| |
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| T |
9098438 |
gt |
9098439 |
T |
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