View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_20 (Length: 307)
Name: NF9182_low_20
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 33860107 - 33859820
Alignment:
| Q |
1 |
cagcattgatgaattgaatcgtgcaggatgatgatatggatgtatttgtggaaaaacaatatcagaagaggaagaagacctatgattctgctgtttagta |
100 |
Q |
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| T |
33860107 |
cagcattgatgaatggaatcgtgcaggatgatgatatggatgtatttgtggaaaaacaacatcagaagaggaaga---cctttgattctgctgtttagga |
33860011 |
T |
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| Q |
101 |
ttagttatgctgattagtataacagaaattttaaatttgaatttcagtattgctaggaacagattttacctattaagtaggattaattgttaggaagacc |
200 |
Q |
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| T |
33860010 |
ttagttatgctgattagtataatagaatttttaaatttgaatttcagtattgctaggaacagattttacctattaagtaggattaattgttgggaagacc |
33859911 |
T |
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| Q |
201 |
tttgaatttctctctaggtgttctgtgtgatgtcctcaactcccaagttggattttgattttactataaatgaagttcaatacgagaaaat |
291 |
Q |
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| T |
33859910 |
tttgaatttctctctaggagttctgtgtgatgtcctcaactcccaagttggattttgattttactataaatgaagttcaatacgagaaaat |
33859820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 32867656 - 32867597
Alignment:
| Q |
117 |
gtataacagaaattttaaatttgaatttcagtattgctaggaacagattttacctattaa |
176 |
Q |
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| T |
32867656 |
gtataacagaatttttaaacttaaattacagtattgttgagaacagattttacctattaa |
32867597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 32867753 - 32867697
Alignment:
| Q |
32 |
tgatatggatgtatttgtggaaaaacaatatcagaagaggaagaagacctatgattctg |
90 |
Q |
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| T |
32867753 |
tgatacggatgcatttgtgggaaaacaatatcagaagagg--gaagacctttgattctg |
32867697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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