View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_21 (Length: 307)
Name: NF9182_low_21
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 35039246 - 35039543
Alignment:
| Q |
2 |
gtggaggaaagctcataattcttttttacttttgacatacacta-------gttaatcatttaatgcttatgggattaactacttaatggtggtctttag |
94 |
Q |
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| T |
35039246 |
gtggaggaaagctcataattcttttttacttttgacatacaccattagggagttaatcatttaatgcttatgggattaactacttaatggtggtctttag |
35039345 |
T |
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| Q |
95 |
tttgtttgttcattgtgcgttttaaggtaaaaacgtgtttgtactttgttgtcttcctttgcactactttgctagggagtaagtttgacgtatgtttggg |
194 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35039346 |
tttgtttgttcattgtgcaatttgaggtaaaaacgtgtttgtactttgttgtcttcctttgcactactttgctagggagtcagtttgacgtatgtttggg |
35039445 |
T |
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| Q |
195 |
tgatttagaaggacatgaattcctgttgttttcgacaaaaggaatgattgctcatttggtcgaccaagttaaaatcttatcattttcgtggaggaaag |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35039446 |
tgatttagaaggacatgaattcctgttgttttcgacaaaaggaatgattgctcatttggtcgaccaagttaaaatcttatcattttcgtggaggaaag |
35039543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 35039533 - 35039723
Alignment:
| Q |
2 |
gtggaggaaagctcataattcttttttacttttgacatacacta-------gttaatcatttaatgcttatgggattaactacttaatggtggtctttag |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35039533 |
gtggaggaaagctcataattcttttttacttttgacatacaccattagggagttaatcatttaatgcttatgggattaactacttaatggtggtctttag |
35039632 |
T |
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| Q |
95 |
tttgtttgttcattgtgcgttttaaggtaaaaacgtgtttgtactttgttgtcttcctttgcactactttgctagggagtaagtttgacgt |
185 |
Q |
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| T |
35039633 |
tttgtttgttcattgtgcgttttaaggtaaaaacgtgtttgtactttgttgtcttcctttgcactactttgctagggagtcagtttgacgt |
35039723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 35039147 - 35039256
Alignment:
| Q |
183 |
cgtatgtttgggtgatttagaaggacatgaattcctgttgttttcgacaaaaggaatgattgctcatttggtcgaccaagttaaaatcttatcattttcg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35039147 |
cgtatgtttgggtgatttagaaggacatgaattcctgttgttttcgacaaaaggaatgattgctcatttggtcgaccaagttaaaatcttatcattttcg |
35039246 |
T |
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| Q |
283 |
tggaggaaag |
292 |
Q |
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|||||||||| |
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| T |
35039247 |
tggaggaaag |
35039256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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