View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_25 (Length: 248)
Name: NF9182_low_25
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 41846114 - 41846304
Alignment:
| Q |
46 |
tcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgtaacgcaa |
145 |
Q |
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| T |
41846114 |
tcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgtaacgcaa |
41846213 |
T |
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| Q |
146 |
cacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtcca |
236 |
Q |
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| T |
41846214 |
cacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtcca |
41846304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 41848965 - 41848927
Alignment:
| Q |
15 |
cttccaaacccataatcaattgccacctttatcatcata |
53 |
Q |
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| T |
41848965 |
cttccaaacccataatcagttgccacctttatcatcata |
41848927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 26890866 - 26890703
Alignment:
| Q |
64 |
agaggagattgttccaccctaatatcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacat |
163 |
Q |
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| T |
26890866 |
agaggagattgctccactctgatatcctcaatcattttaacaacatctaccatagttggcctcttctctggctgctgcaccacacaagccaacccaacat |
26890767 |
T |
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| Q |
164 |
tcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttcttgatcaaacacctc |
227 |
Q |
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| T |
26890766 |
gcagcattgacacaagctcttcctcaatgttcttgtatcgcagaagttcttgatcaaaaacctc |
26890703 |
T |
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