View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_29 (Length: 241)
Name: NF9182_low_29
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4649506 - 4649727
Alignment:
| Q |
1 |
ctatcgtttatgcaattttccatttaacactaaattaaagatagcacgtgatccatgcatttttgatttatatacgccagaccccagaaaagatatgaat |
100 |
Q |
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| T |
4649506 |
ctatcgtttatgcaattttccatttaacactaaattaaagatagcacgtgatccatgcatttttgatttatatacgccagaccccagaaaagatatgaat |
4649605 |
T |
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| Q |
101 |
ccgaaatgtacgttttttgtccctttgtcattgtcatgacaagtggcatttaaaaatgtaaggatgctcttgaatttttgtaaaatcatattaaatccaa |
200 |
Q |
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| T |
4649606 |
ccgaaatgtacgttttttgtccctttgtcattgtcatgacaagtggcatttaaaaatgtaaggatgctcttgaa-ttttgtaaaatcatattaaatccga |
4649704 |
T |
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| Q |
201 |
ttcacaattattgaaacatattc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4649705 |
ttcacaattattgaaacatattc |
4649727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 23682833 - 23682697
Alignment:
| Q |
19 |
tccatttaacactaaattaaagatagcacgtgatccatgcatttttgatttatatacgccagaccccagaaaagatatgaatccgaaatgtacgtttttt |
118 |
Q |
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| T |
23682833 |
tccatttaacactaaattaaagatagcacatgatccatgcaattttgatttatatacgccggaccccggaaaagatatgaatccgaaatgtacgtttttt |
23682734 |
T |
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| Q |
119 |
gtccctttgtcattgtcatgacaagtggcatttaaaa |
155 |
Q |
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| T |
23682733 |
gtccctttgtcattgtcatgacaagtggaatttaaaa |
23682697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 23682638 - 23682596
Alignment:
| Q |
181 |
taaaatcatattaaatccaattcacaattattgaaacatattc |
223 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
23682638 |
taaaatcacattaaatccagttcacaattattgaaacatattc |
23682596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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