View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_low_3 (Length: 897)
Name: NF9182_low_3
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 49760664 - 49760363
Alignment:
| Q |
18 |
agtcagtgagtaagtaacaaagagtacgaaagaaacaaggctcaaaggattaggtaattatttttggcaagtaactcaaattatagcttgtcattacgtt |
117 |
Q |
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| T |
49760664 |
agtcagagagtaagtaacatagagtacgaaagaaacaaggctcaaaggattaggtaattatttttggcaagtaactcaaattatagcttgtcattacgtt |
49760565 |
T |
|
| Q |
118 |
tcgagtagtgtgtaacgtactaaacttgaagtttttctttattaaaacaacccttttaaaaaataaaatagcatttaagttttaactcgatccttcccta |
217 |
Q |
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| T |
49760564 |
tcgagtagtgtgtaacgtactaaacttgaagtttttctttattaaaacaacccttttaaaaaataaaatagcatttaagttttaactcgatccttcccta |
49760465 |
T |
|
| Q |
218 |
cacaaacacaactgtcttctttcctactctactctgcaatcttaattttctttttcatagaagttgcacctgcattgcaggttacaacttctcccttctt |
317 |
Q |
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| T |
49760464 |
cacaaacacaactgtcttctttcctactctactccgcaatcttaattttctttttcatagaagttgcacctgcattgcaggttacaacttctcccttctt |
49760365 |
T |
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| Q |
318 |
ca |
319 |
Q |
| |
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|| |
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| T |
49760364 |
ca |
49760363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 486 - 888
Target Start/End: Complemental strand, 49760247 - 49759839
Alignment:
| Q |
486 |
ccagtaagtccaaccgaagcaactgctctagtcactttcattgtgagccctcacaatgaagaagnnnnnnnnn-cccaattgtaaaaagtggatannnnn |
584 |
Q |
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| T |
49760247 |
ccagtaagtccaaccgaagcaactgctctagtcactttcattgtgagccctcacaatgaagaagttttttttttcccaattgtaaaaagtggatattttt |
49760148 |
T |
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| Q |
585 |
nnagtgaacagtggatannnnnnnnnagatgaagatgagattcttacactctatccacacgacacgacattgacga------catcattccgaccgaaac |
678 |
Q |
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| T |
49760147 |
ttagtgaacagtggatatttttttt-agatgaagatgagattcttacacactatccacacgacatgacattgacgatgacgacatcattccaaccgaaac |
49760049 |
T |
|
| Q |
679 |
gactatatattctaattacaatccactcggacatctagttcattaaatttgatctacgtacaaggtagtcaaatatgataagtatagacttgttgtcaat |
778 |
Q |
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| T |
49760048 |
gactatatattctgattacaatccactcggacatctagttcattaaatttgacctacgtacaaggtagtcaaatatgataagtatagacttgttgtcaat |
49759949 |
T |
|
| Q |
779 |
tccgatggatgcatgtggaggtgtagagcatccctaatcgagaaaagcaagttgtgagaaatcgcacacttgaatgagatgatacatgtttaccagtatc |
878 |
Q |
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| T |
49759948 |
tccaatggatgcatgtggaggtgtagagcatccctaatcgagaaaagaaagttgtgagaaatcgcacacttgaatgagatgatacatgtttaccagtatc |
49759849 |
T |
|
| Q |
879 |
tgtgctgctc |
888 |
Q |
| |
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|||| ||||| |
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| T |
49759848 |
tgtgttgctc |
49759839 |
T |
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