View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_high_15 (Length: 425)

Name: NF9183_high_15
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_high_15
NF9183_high_15
[»] chr4 (25 HSPs)
chr4 (18-325)||(40761417-40761724)
chr4 (18-325)||(52918513-52918820)
chr4 (18-325)||(38989724-38990031)
chr4 (22-312)||(40692051-40692341)
chr4 (18-312)||(45658599-45658893)
chr4 (16-312)||(55611459-55611755)
chr4 (89-312)||(44108787-44109010)
chr4 (63-312)||(47604573-47604822)
chr4 (22-217)||(47984851-47985046)
chr4 (20-217)||(53512297-53512494)
chr4 (18-180)||(53270151-53270313)
chr4 (18-172)||(11648461-11648615)
chr4 (99-174)||(4352637-4352712)
chr4 (264-312)||(53270397-53270445)
chr4 (386-425)||(44109122-44109161)
chr4 (385-423)||(52918415-52918453)
chr4 (385-425)||(38989624-38989664)
chr4 (385-425)||(40691902-40691942)
chr4 (385-425)||(40761317-40761357)
chr4 (385-425)||(55610608-55610648)
chr4 (385-424)||(11648856-11648895)
chr4 (254-312)||(11648687-11648745)
chr4 (385-421)||(45658356-45658392)
chr4 (385-423)||(53270554-53270592)
chr4 (103-180)||(34952976-34953053)
[»] chr7 (28 HSPs)
chr7 (22-312)||(35584136-35584426)
chr7 (18-312)||(109456-109750)
chr7 (18-312)||(43748276-43748570)
chr7 (22-312)||(15031676-15031966)
chr7 (22-312)||(7254467-7254756)
chr7 (54-311)||(29331376-29331633)
chr7 (22-312)||(26792764-26793045)
chr7 (130-312)||(33850940-33851122)
chr7 (18-244)||(45490858-45491084)
chr7 (18-199)||(38256655-38256836)
chr7 (18-199)||(38264230-38264411)
chr7 (21-199)||(37999439-37999617)
chr7 (18-133)||(33849542-33849657)
chr7 (233-312)||(38256583-38256663)
chr7 (233-312)||(38264158-38264238)
chr7 (233-312)||(37999609-37999687)
chr7 (47-171)||(19647778-19647901)
chr7 (385-425)||(15031527-15031567)
chr7 (385-424)||(22203595-22203634)
chr7 (385-425)||(29331199-29331239)
chr7 (385-425)||(38256434-38256474)
chr7 (385-425)||(38264009-38264049)
chr7 (388-425)||(35583985-35584022)
chr7 (389-425)||(109863-109899)
chr7 (385-425)||(7254316-7254356)
chr7 (385-425)||(33851237-33851277)
chr7 (385-425)||(37999796-37999836)
chr7 (388-425)||(26793159-26793196)
[»] chr5 (11 HSPs)
chr5 (18-312)||(5342942-5343236)
chr5 (18-325)||(6431472-6431779)
chr5 (18-312)||(32747613-32747907)
chr5 (18-312)||(24854997-24855292)
chr5 (58-305)||(31471133-31471365)
chr5 (21-312)||(41615363-41615654)
chr5 (385-425)||(6431372-6431412)
chr5 (389-421)||(31471094-31471126)
chr5 (385-424)||(27949688-27949727)
chr5 (146-180)||(23248355-23248389)
chr5 (385-425)||(24854820-24854860)
[»] chr3 (30 HSPs)
chr3 (18-312)||(49326389-49326683)
chr3 (22-312)||(48062956-48063246)
chr3 (18-288)||(41973668-41973938)
chr3 (18-312)||(47373840-47374134)
chr3 (18-312)||(44206830-44207124)
chr3 (20-312)||(8485498-8485794)
chr3 (16-312)||(16483621-16483917)
chr3 (18-244)||(30389685-30389911)
chr3 (100-312)||(21449731-21449943)
chr3 (18-308)||(21978965-21979255)
chr3 (18-308)||(22001396-22001686)
chr3 (148-309)||(49439902-49440063)
chr3 (16-182)||(10493849-10494014)
chr3 (18-124)||(18876893-18876999)
chr3 (241-312)||(18877019-18877090)
chr3 (47-178)||(23334081-23334210)
chr3 (385-425)||(49326238-49326278)
chr3 (253-310)||(9331528-9331585)
chr3 (388-425)||(21449580-21449617)
chr3 (388-425)||(41973552-41973589)
chr3 (385-425)||(18877200-18877240)
chr3 (385-425)||(21978812-21978852)
chr3 (385-425)||(22001243-22001283)
chr3 (385-425)||(44206633-44206673)
chr3 (263-312)||(9128027-9128076)
chr3 (263-312)||(9136134-9136183)
chr3 (385-424)||(9331698-9331737)
chr3 (389-425)||(8485349-8485385)
chr3 (385-425)||(47373691-47373731)
chr3 (393-425)||(48063401-48063433)
[»] chr8 (7 HSPs)
chr8 (18-312)||(24831520-24831814)
chr8 (18-312)||(10808-11094)
chr8 (18-172)||(41835450-41835604)
chr8 (103-180)||(11457716-11457793)
chr8 (385-424)||(41835845-41835884)
chr8 (254-312)||(41835676-41835734)
chr8 (388-425)||(10657-10694)
[»] chr1 (25 HSPs)
chr1 (21-312)||(18277285-18277575)
chr1 (20-312)||(39598980-39599272)
chr1 (18-312)||(5748983-5749277)
chr1 (18-312)||(3474339-3474633)
chr1 (18-308)||(4852108-4852397)
chr1 (122-312)||(10222317-10222507)
chr1 (18-244)||(14271096-14271322)
chr1 (18-312)||(30517459-30517753)
chr1 (18-189)||(10311794-10311965)
chr1 (18-312)||(7563630-7563924)
chr1 (18-180)||(12524116-12524278)
chr1 (28-180)||(6604955-6605106)
chr1 (233-312)||(22334531-22334610)
chr1 (16-92)||(10222512-10222588)
chr1 (257-312)||(17384983-17385038)
chr1 (385-425)||(4852531-4852571)
chr1 (385-425)||(22334380-22334420)
chr1 (388-425)||(18277689-18277726)
chr1 (385-425)||(39599381-39599421)
chr1 (385-424)||(17384823-17384862)
chr1 (103-178)||(41367700-41367775)
chr1 (385-425)||(10311620-10311660)
chr1 (386-421)||(5748778-5748813)
chr1 (103-157)||(30516756-30516810)
chr1 (388-425)||(10222166-10222203)
[»] chr6 (5 HSPs)
chr6 (18-311)||(13037653-13037946)
chr6 (385-422)||(13038081-13038118)
chr6 (385-424)||(12304167-12304206)
chr6 (103-178)||(19624743-19624818)
chr6 (385-423)||(34950046-34950083)
[»] chr2 (11 HSPs)
chr2 (18-312)||(5463456-5463750)
chr2 (22-312)||(15112418-15112708)
chr2 (18-180)||(41962433-41962595)
chr2 (18-180)||(34949234-34949395)
chr2 (18-178)||(45536335-45536495)
chr2 (16-168)||(5937605-5937756)
chr2 (22-178)||(21484401-21484555)
chr2 (385-425)||(5937259-5937299)
chr2 (385-424)||(18964502-18964541)
chr2 (277-311)||(18964356-18964390)
chr2 (25-97)||(24169102-24169174)
[»] scaffold0168 (2 HSPs)
scaffold0168 (18-273)||(16352-16607)
scaffold0168 (385-425)||(16663-16703)
[»] scaffold0054 (2 HSPs)
scaffold0054 (18-184)||(18172-18337)
scaffold0054 (264-312)||(18063-18111)
[»] scaffold0064 (1 HSPs)
scaffold0064 (119-180)||(62293-62354)
[»] scaffold0001 (1 HSPs)
scaffold0001 (25-174)||(426514-426661)
[»] scaffold0127 (1 HSPs)
scaffold0127 (103-178)||(37210-37285)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 40761724 - 40761417
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  40761724 tcagcttaatgacaaaaaattgcatggtattctttgttgtatttgtgtgttttgatgatgttgaagctgaaaaccagagaagatgtatttatagaggtcc 40761625  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||  ||||||||||||| |||||||||||    
T  40761624 ttggatgttgtggaacgcataaactcctggtgcaatgtggtccgtacaaaagaatcctatgctgaggtattccggatttcgttttccagaacacacatac 40761525  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatgcaact 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40761524 gccctaggcaaatccggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatgcaact 40761425  T
Q  318 acttaatt 325  Q
    ||||||||    
T  40761424 acttaatt 40761417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 52918820 - 52918513
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||     
T  52918820 tcagcttaatgacaaaaatttgcatggtattctttgttgtgtttgtgtgttttgatggtgttgaagctgaaaaccggagaggatgtatttatataggtcc 52918721  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||  ||||| ||||||  |||||||||||    
T  52918720 ttggatgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaatcctatgctgaggtattccggatttcattttccggaacacacatac 52918621  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatgcaact 317  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||     
T  52918620 gccctaggcaaatccagatttcgtaatccgaaaatcatatctttggttattttatcaaataaatgaacatatttgatgtaaaataaaacataatgcaaca 52918521  T
Q  318 acttaatt 325  Q
    ||||||||    
T  52918520 acttaatt 52918513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 38990031 - 38989724
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||     
T  38990031 tcagcttaatgacaaaaatttgcatggtattctttgttgtgtttgtgtgtttcgatggtgttgaacctgaaaaccggagatgatgtatttatagaggtcc 38989932  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||  |||| |||||||  |||||||||||    
T  38989931 ttggatattgtggaccacataaactcctggtgcaatgtggtccatacaaaagaatcctatgctgaggtattccggattttgttttccggaacacacatac 38989832  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatgcaact 317  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||     
T  38989831 gccctaggaaaatctggatttcgtaatccgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaataaaaacataatgaaaca 38989732  T
Q  318 acttaatt 325  Q
    | ||||||    
T  38989731 aattaatt 38989724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 40692341 - 40692051
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||||||||| ||   |||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||    
T  40692341 cttaatgacaaaaatttaaatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaaccggagaggatgtatttatagaggtccttgg 40692242  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccc 221  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||  ||||||||||||  ||||||| |||||||    
T  40692241 atgttgtggaccgcataaactcctggtgcaatttggtccatacaaaagaatcctatgctgaggtattccgaatttcgttttccggaacacacttacgccc 40692142  T
Q  222 taggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||  |||| |||||||||||| ||||||  |||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||||    
T  40692141 taggtcaatccggatttcgtaatccgaaaagtatatctttggttattttatcgattaaatgaatacttttgacgtaaattaaaacataatg 40692051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 45658893 - 45658599
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| |||| |||||||| | |||| ||||||||||||||||||     
T  45658893 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgatgctgaaaatcggagaggatgtatttatagaggtcc 45658794  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    ||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||  ||||||| |||    
T  45658793 ttggatgttgtcgaccacataaactcttggtgcaatgtggtccatacaaaagaatcctatgttgaggtattccagatttcgttttccggaacacacttac 45658694  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||  ||||  |||||| |||| |||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  45658693 gccctaggtcaatccagatttcataatccgaaaagcatatctttggttattttatcaattaaatgaacatttttgacgtaaattaaaacataatg 45658599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 55611755 - 55611459
Alignment:
Q  16 catcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggt 115  Q
    |||||||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||  |||| |||||||||||||||||    
T  55611755 catcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaactggagaggatgtatttatagaggt 55611656  T
Q  116 ctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacat 215  Q
    | |||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||   |||||||||||   ||||||| |    
T  55611655 ccttggatgttgtggacaacataaactcatggtgcaatgtggtccatacaaaagaatcctatgctgaggtattctggatttcgttttctggaacacactt 55611556  T
Q  216 acgccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||||  |||| |||||||||||| | ||||   |||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  55611555 acgccctaggtcaatccggatttcgtaatccaaaaaggttatctttgattattttatcgattaaacgaacatttttgacgtaaattaaaacataatg 55611459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 89 - 312
Target Start/End: Original strand, 44108787 - 44109010
Alignment:
Q  89 aaccagagaagatgtatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtatt 188  Q
    |||| |||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  44108787 aaccggagatgatgtatttatagaggtccttggatgttgtggaccacataaactcttggtgcaatgtggtccatacaaaagaatcatatgctaaggtatt 44108886  T
Q  189 ccatatttcgttttccataacacacatacgccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacata 288  Q
    ||  ||||||||||||  ||| ||||||||||||||||||||  ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||    
T  44108887 cctgatttcgttttccggaacccacatacgccctaggcaaattcggatttcataatccgaaaagcatatctttggttattttatcgaataaatgaacata 44108986  T
Q  289 tttgacgtaaattaaaacataatg 312  Q
    ||||||||||||||||||||||||    
T  44108987 tttgacgtaaattaaaacataatg 44109010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 63 - 312
Target Start/End: Original strand, 47604573 - 47604822
Alignment:
Q  63 tgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcat 162  Q
    |||||||| ||||| |||||||| |||||  |||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| | || |||    
T  47604573 tgtgttttaatggtattgaagctcaaaactggagaggatgtatttatagaggtccttggaagttgtggaccacataaactcctggtgcaatttagtccat 47604672  T
Q  163 acaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccctaggcaaatctggatttcgtaattcgaaaatcatatctttg 262  Q
    ||||||||||||||||||||||||||||  |||| |||||||| ||||||| |||||||||||  |||| |||||||||||| ||| ||  |||| ||||    
T  47604673 acaaaagaatcctatgctaaggtattccgaattttgttttccagaacacacttacgccctaggtcaatccggatttcgtaatccgagaaatatatatttg 47604772  T
Q  263 gttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47604773 gttattttatcgattaaatgaacatatttgacgtaaattaaaacataatg 47604822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 47985046 - 47984851
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| ||||    
T  47985046 cttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaaccggagatgctgtatttatagaggtccttgg 47984947  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||  |||||||||||    
T  47984946 atgttgtggaccacataaactcttggtgcaatgtggtgcatacaaaagaatcctatgctgaggtattccagatttcgttttccggaacacacatac 47984851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 53512297 - 53512494
Alignment:
Q  20 agcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtcttt 119  Q
    |||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||    
T  53512297 agcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaaccggagaggatgtatttatagaggtcctt 53512396  T
Q  120 ggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |  ||||||||||||  |||||||||||    
T  53512397 ggatgttgtggaccacataaactcttggtgcaatgtggttcatacaaaagaatcctatgctgaggtatttcgaatttcgttttccggaacacacatac 53512494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 53270151 - 53270313
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| ||||||||||||| |||| ||||||||||||||| |||| | ||||||||||||||||     
T  53270151 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttggtggtattgaagctgaaaaccggagagggtgtatttatagaggtcc 53270250  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    |||||||||||||| | ||||||||| |||||||||||||| |||||||||| ||||||||||    
T  53270251 ttggatgttgtggatcacataaactcttggtgcaatgtggtccatacaaaaggatcctatgct 53270313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 11648461 - 11648615
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    ||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| |||| ||||||||||||| | |||| | ||||||||||||||||     
T  11648461 tcagcttaatgacaaaaaattgcatggttttctttggtgtgtttgtgtgttttgctggtattgaagctgaaaatcggagagggtgtatttatagaggtcc 11648560  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaat 172  Q
    |||||||||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  11648561 ttggatgttgtggaccacataaacttttggtgcaatgtggtccatacaaaagaat 11648615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 4352637 - 4352712
Alignment:
Q  99 gatgtatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcc 174  Q
    |||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||  |||| ||||||||||    
T  4352637 gatgtatttatagaggtccttggatgttgtggaccatataaactcttggtgcaatgtgggacatataaaagaatcc 4352712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 53270397 - 53270445
Alignment:
Q  264 ttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  53270397 ttattttatcgattaaatgaacatttttgacgtaaattaaaacataatg 53270445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 44109122 - 44109161
Alignment:
Q  386 agcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44109122 agcacattatcacggatcatctaaactaacttcttcctcc 44109161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 52918453 - 52918415
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcct 423  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52918453 tagcacattatcacggatcatctaaactaacttcttcct 52918415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 38989664 - 38989624
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  38989664 tagcacattatcatggatcatctaaactaacttcttcctcc 38989624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 40691942 - 40691902
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  40691942 tagcacatgatcacggatcatctaaactaacttcttcctcc 40691902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 40761357 - 40761317
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  40761357 tagcacattatcacgaatcatctaaactaacttcttcctcc 40761317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 55610648 - 55610608
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  55610648 tagcacattatcacggatcatctaaactaatttcttcctcc 55610608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 11648856 - 11648895
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctc 424  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  11648856 tagcacattatcacggatcatctaaactaccttcttcctc 11648895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 11648687 - 11648745
Alignment:
Q  254 atatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||| | |||||||||  ||||||||||||| |||||| |||||||||||||||||    
T  11648687 atatcttcgattattttatataataaatgaacatctttgacataaattaaaacataatg 11648745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 421
Target Start/End: Complemental strand, 45658392 - 45658356
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttc 421  Q
    |||||||||||||||||||||||||||||| ||||||    
T  45658392 tagcacattatcacggatcatctaaactaatttcttc 45658356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 53270554 - 53270592
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcct 423  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  53270554 tagcacattataacggaccatctaaactaacttcttcct 53270592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 34953053 - 34952976
Alignment:
Q  103 tatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    |||||||||| || | |||| |||||||||| |||||| |   ||||||||||||  |||||||||||||| ||||||    
T  34953053 tatttatagaagtatctggacgttgtggaccacataaattatcggtgcaatgtggaccatacaaaagaatcttatgct 34952976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 35584426 - 35584136
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||    
T  35584426 cttaatgacaaaaatttgcatgatattctttgttgtgtttgtgtgttttgatggtgttcaagctgaaaaccggagatgatgtatttatagaggtccttgg 35584327  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccc 221  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||| ||||||||||||  |||||||||||||||    
T  35584326 atgttgtggaccacataaactcctggtgcaatgtggtcgatacaaaagaatcatatgctgaggtattccagatttcgttttccggaacacacatacgccc 35584227  T
Q  222 taggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||| ||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35584226 taggcaaatccggatttcataatccgaaaagcatatatttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 35584136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 109456 - 109750
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| || | ||||||||||| || ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||     
T  109456 tcagcttaatgacaaaaatttgcatgattttctttgttgtgttcgtgtgttttgatggtgttgaagctgaaaaccggagaggatgtgtttatagaggtcc 109555  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |||||||||  ||||||||||||  |||||||||||    
T  109556 ttggatgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaatcctattctgaggtattccggatttcgttttccggaacacacatac 109655  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||||  |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  109656 gccctaggcaaattcggatttcgtaatccgaaaagcatatatttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 109750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 43748570 - 43748276
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||     
T  43748570 tcagcttaatgacaaaaatttgcatggtattctttgttgtgtttgtgtgttttgatggtgttgaagctaaaaaccggagaggatgtatttatagaggtcc 43748471  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||||| |||||| ||||||||   |||||||||| |  |||||||||||    
T  43748470 ttggatgttgtggatcacataaactcctggtgcaatgtggtccatacaaaagaatcttatgctgaggtattcgggatttcgtttttcggaacacacatac 43748371  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43748370 gccctaggcaaatccgaatttcgtaatccaaaaatcatatctttggttattttatcgaataaataaacatatttgacgtaaattaaaacataatg 43748276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 15031966 - 15031676
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||| ||||| |||| |||| ||||||||||| ||||||||||||||||| |||||||||||||| | |||| |||||||||||||||||| ||||    
T  15031966 cttaatgagaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggcgttgaagctgaaaatcggagaggatgtatttatagaggtccttgg 15031867  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccc 221  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||| |||||||||  ||||||||||||  |||||||||||||||    
T  15031866 atgttgtggaccacataaactcttggtgcaatgtggtccatacaaaagaatcatatgctgaggtattccggatttcgttttccggaacacacatacgccc 15031767  T
Q  222 taggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15031766 taggcaaatccggatttcgtaatccgaaagtcatatctttggttattttatcgaattaatgaacatatttgacgtaaattaaaacataatg 15031676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 7254756 - 7254467
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||  |||| |||||||||||||||||| ||||    
T  7254756 cttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggttttgaagctgaaaactggagaggatgtatttatagaggtccttgg 7254657  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccc 221  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| | |||||||||  ||||||||||||| ||||||||||| |||    
T  7254656 atgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaatcatatgttgaggtattccggatttcgttttccaaaacacacatac-ccc 7254558  T
Q  222 taggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||| |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7254557 taggcgaatccggatttcgtaatccgaaaatcatatctttggttattttatcaaataaatgaacatatttgacgtaaattaaaacataatg 7254467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 54 - 311
Target Start/End: Complemental strand, 29331633 - 29331376
Alignment:
Q  54 ttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaat 153  Q
    |||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||    
T  29331633 ttgtgtttgtgtgttttgatggtgttgaagctgaaaaccggagaggatgtatttatagaggtccttggatgttgtggaccacaaaaactcctggtgcaat 29331534  T
Q  154 gtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccctaggcaaatctggatttcgtaattcgaaaatc 253  Q
    |||||  |||||||||||||||||| | |||||||||  ||||||||||||  ||||||||||||||||| ||||||| |||||||||||| | ||||||    
T  29331533 gtggtctatacaaaagaatcctatgttgaggtattccggatttcgttttccgaaacacacatacgccctaagcaaatccggatttcgtaatccaaaaatc 29331434  T
Q  254 atatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29331433 atatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataat 29331376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 26792764 - 26793045
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||    
T  26792764 cttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaaccggagaggatgtatttatagaggtccttgg 26792863  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccc 221  Q
    |||||||||||| ||||||||| |||||||||         ||||||||||| |||||| |||||||||  |||||||||| || |||||||||||||||    
T  26792864 atgttgtggaccacataaactcttggtgcaat---------acaaaagaatcatatgctgaggtattccggatttcgtttttcagaacacacatacgccc 26792954  T
Q  222 taggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26792955 taggcaaatccggatttcgcaatccgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 26793045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 130 - 312
Target Start/End: Original strand, 33850940 - 33851122
Alignment:
Q  130 gaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccctaggcaaa 229  Q
    |||| |||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| |||| |||||||| |||||||||||||||||||||||    
T  33850940 gaccacataaactcctggtgcaatgtggtccatacaaaagaatcttatgctgaggtattccagattttgttttccagaacacacatacgccctaggcaaa 33851039  T
Q  230 tctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |  |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33851040 ttcggatttcgtaatccgaaaatcatatctttgattattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 33851122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 45490858 - 45491084
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| || | ||||||| ||| |||||||||||| ||||| |||||||||| |||| |||| ||||||||||||||||||     
T  45490858 tcagcttaatgacaaaaatttgcatgattttctttggtgtgtttgtgtgttttaatggtattgaagctgagaaccggagaggatgtatttatagaggtcc 45490957  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||  ||||||||||||  |||||||||||    
T  45490958 ttggatgttgtggaccacataaactcttggtgcaatgtggtccatacaaaagaatcctatgttgaggtattccggatttcgttttccggaacacacatac 45491057  T
Q  218 gccctaggcaaatctggatttcgtaat 244  Q
    |||||||||||||| ||||||||||||    
T  45491058 gccctaggcaaatccggatttcgtaat 45491084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 38256836 - 38256655
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||  ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||  | || ||||||||||||||||||     
T  38256836 tcagcttaatgacttaaatttgcatggtattctttgttgtgtttgtgtgttttgatggtgttgaagctgaaaactggtgaggatgtatttatagaggtcc 38256737  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgt 199  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||  |||||||    
T  38256736 ttggatgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaattctatgctgaggtattccggatttcgt 38256655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 38264411 - 38264230
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||  ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||  | || ||||||||||||||||||     
T  38264411 tcagcttaatgacttaaatttgcatggtattctttgttgtgtttgtgtgttttgatggtgttgaagctgaaaactggtgaggatgtatttatagaggtcc 38264312  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgt 199  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||  |||||||    
T  38264311 ttggatgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaattctatgctgaggtattccggatttcgt 38264230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 37999439 - 37999617
Alignment:
Q  21 gcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttg 120  Q
    ||||||||||||||| |||| || | ||||||| ||| ||||||||||||||||||||||||||||||||||  | | ||||||||||| |||||||| |    
T  37999439 gcttaatgacaaaaatttgcatgattttctttggtgtgtttgtgtgttttgatggtgttgaagctgaaaaccgaaaatgatgtatttatggaggtcttgg 37999538  T
Q  121 gatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgt 199  Q
     |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |||||||||  |||||||    
T  37999539 aatgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaatcatatgctgaggtattccggatttcgt 37999617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 33849542 - 33849657
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| ||||||||||| |||| |||||||||||| ||||||||||||||||||| | |||| ||||||||||||||| ||     
T  33849542 tcagcttaatgacaaaaatttgcatggtattcttttttgtgtttgtgtgtttttatggtgttgaagctgaaaatcggagatgatgtatttatagagatcc 33849641  T
Q  118 ttggatgttgtggacc 133  Q
    ||||||||||| ||||    
T  33849642 ttggatgttgtagacc 33849657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 38256663 - 38256583
Alignment:
Q  233 ggatttcgtaattcgaaaatcatatcttt-ggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38256663 ggatttcgtaatccgaaaatcatatattttggttattttatcgaataaatgaacatattagacgtaaattaaaacataatg 38256583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 38264238 - 38264158
Alignment:
Q  233 ggatttcgtaattcgaaaatcatatcttt-ggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38264238 ggatttcgtaatccgaaaatcatatattttggttattttatcgaataaatgaacatattagacgtaaattaaaacataatg 38264158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 37999609 - 37999687
Alignment:
Q  233 ggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||| |||||   ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  37999609 ggatttcgtaatccgaaagg-atatctttggttattttatctgttaaatgaacatatttgacgtaaattaaaacataatg 37999687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 19647778 - 19647901
Alignment:
Q  47 ttctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttggatgttgtggaccgcataaactcctg 146  Q
    ||||||| ||| ||||||||||||| |||    |||||||||||||||| || || |||||||| |||| | |||| |||||||||| ||||||||   |    
T  19647778 ttctttggtgtgtttgtgtgttttgctggaaaagaagctgaaaaccaga-aacatttatttataaaggtttctggacgttgtggaccacataaactgtcg 19647876  T
Q  147 gtgcaatgtggtgcatacaaaagaa 171  Q
    |||||||||||| ||||||||||||    
T  19647877 gtgcaatgtggtccatacaaaagaa 19647901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 15031567 - 15031527
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15031567 tagcacattatcacggatcatctaaactaacttcttcctcc 15031527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 424
Target Start/End: Complemental strand, 22203634 - 22203595
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctc 424  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22203634 tagcacattatcacggatcatctaaactaacttcttcctc 22203595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 29331239 - 29331199
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  29331239 tagcacattatcacggatcatctaaactaacttcatcctcc 29331199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 38256474 - 38256434
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  38256474 tagcacattatcacagatcatctaaactaacttcttcctcc 38256434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 38264049 - 38264009
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  38264049 tagcacattatcacagatcatctaaactaacttcttcctcc 38264009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 35584022 - 35583985
Alignment:
Q  388 cacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  35584022 cacattatcacggatcatctaaactaacttcctcctcc 35583985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 109863 - 109899
Alignment:
Q  389 acattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||| |||||||||||||||||||||||||||    
T  109863 acattatcatggatcatctaaactaacttcttcctcc 109899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 7254356 - 7254316
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  7254356 tagcacgttatcacggatcatataaactaacttcttcctcc 7254316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 33851237 - 33851277
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  33851237 tagcacattatcacagatcatctaaactaacttcctcctcc 33851277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 37999796 - 37999836
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  37999796 tagcacattagcacggatcatctaaactaacttcctcctcc 37999836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 26793159 - 26793196
Alignment:
Q  388 cacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||| | |||||||||||||||||||||||    
T  26793159 cacattatcacgaaccatctaaactaacttcttcctcc 26793196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 5343236 - 5342942
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||     
T  5343236 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaaccggagaggatgtatttatagaggtcc 5343137  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |||||||||  |||||||||| |  |||||||||||    
T  5343136 ttggatgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaatcatatgctgaggtattccggatttcgtttttcggaacacacatac 5343037  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5343036 gccctaggcaaatccggatttcttaattcgaaaatcatttctttggttattttatcgaataaacgaacatatttgacgtaaattaaaacataatg 5342942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 6431779 - 6431472
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| || | ||||||| ||| ||||||| |||||||||  ||||||||||||||| |||| |||||||||||||||||      
T  6431779 tcagcttaatgacaaaaatttgcatgattttctttggtgtgtttgtgtattttgatggcattgaagctgaaaaccggagatgatgtatttatagaggttc 6431680  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||| |||||  |||||||||||    
T  6431679 ttggatgttgtggaccacatgaactcctggtgcaatgtggtccatacgaaagaatcctatgctgaggtattccagatttcgatttccgaaacacacatac 6431580  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatgcaact 317  Q
    ||||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  6431579 gccctaggcaaatccagatttcgtaatccgaaacgcatatctttggttattttatcgaataaatgaacatatctgacgtaaattaaaacataatgcaaca 6431480  T
Q  318 acttaatt 325  Q
    ||||||||    
T  6431479 acttaatt 6431472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 32747613 - 32747907
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||     
T  32747613 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagcagaaaaccggagatgatgtatttatagaggtcc 32747712  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||| |||||||||  |||||| |||||| |||||||||||    
T  32747713 ttggatgttgtggaccacataaactcctggtgtaatgtggtccatacaaaagaatcatatgctgaggtattccggatttcgatttccagaacacacatac 32747812  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    | | |||||||||| | |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32747813 gtcgtaggcaaatccgaatttcgtaatccgaaaagcatatatttggttattttatcgaataaatgaacatatttgacgtaaattaaaatataatg 32747907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 24855292 - 24854997
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtatt-ctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtc 116  Q
    |||||||||||||||||| |||| |||| || ||||||| | |||||||| ||||||||||||||||||||||||| ||||  ||||||||||||| |||    
T  24855292 tcagcttaatgacaaaaatttgcatggtttttctttgttatgtttgtgtgctttgatggtgttgaagctgaaaaccggagagtatgtatttatagatgtc 24855193  T
Q  117 tttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacata 216  Q
     ||| |||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||    
T  24855192 cttgaatgttgcggaccacataaactcttggtgcaatgtggtccatacaaaagaatcctatgctgaggtattccgtatttcgttttccggaacacacata 24855093  T
Q  217 cgccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||| ||||| | |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24855092 cgccctaggaaaatccgaatttcgtaatccgaaaagcatatctttggttattttatcgaataaatgaacatatttgacgtaatttaaaacataatg 24854997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 305
Target Start/End: Complemental strand, 31471365 - 31471133
Alignment:
Q  58 atttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtgg 157  Q
    |||||||||||||| | || |||||||| ||||||||||| |  ||||||||||||||| |||||||||||||||| ||||||||| |                
T  31471365 atttgtgtgttttgctagtattgaagctcaaaaccagagagggggtatttatagaggtccttggatgttgtggaccacataaactctt------------ 31471278  T
Q  158 tgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccctaggcaaatctggatttcgtaattcgaaaatcatat 257  Q
       |||||||||||||||||| | |||||||||  || |||||||||  || |||| |||||||||||  |||| |||||||||||| |||||  |||||    
T  31471277 ---atacaaaagaatcctatgttgaggtattccggatgtcgttttccggaatacacttacgccctaggtgaatccggatttcgtaatccgaaaggcatat 31471181  T
Q  258 ctttggttattttatcgaataaatgaacatatttgacgtaaattaaaa 305  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  31471180 ctttggttattttatcgattaaatgaacatatttgacgtacattaaaa 31471133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 41615654 - 41615363
Alignment:
Q  21 gcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttg 120  Q
    ||||||||||||||| |||  |||| ||||||  ||| ||||| |||||||||||| |||||| |||||||| |||| | |||||| ||||||||| |||    
T  41615654 gcttaatgacaaaaatttgtgtggttttctttcgtgtgtttgtctgttttgatggtattgaagttgaaaaccggagagggtgtattgatagaggtccttg 41615555  T
Q  121 gatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct-aaggtattccatatttcgttttccataacacacatacgc 219  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||| ||| |||| | ||| || |||  ||||||   | |  || |||| |||||    
T  41615554 gatgttgtggaccacataaactcttggtgcaatgtggtccatacaaaaggatcatatgttgaagcta-tccggatttcgaaattcggaatacacttacgc 41615456  T
Q  220 cctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||    ||||  |||| | |||| || |    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41615455 cctatatgaatccagattccataatccggactgaatatctttggttattttatcgattaaatgaacatatttgacgtaaattaaaacataatg 41615363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 6431412 - 6431372
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  6431412 tagcacattatcacggatcatttaaactaacttcttcctcc 6431372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 389 - 421
Target Start/End: Complemental strand, 31471126 - 31471094
Alignment:
Q  389 acattatcacggatcatctaaactaacttcttc 421  Q
    |||||||||||||||||||||||||||||||||    
T  31471126 acattatcacggatcatctaaactaacttcttc 31471094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 27949688 - 27949727
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctc 424  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  27949688 tagcacattatcatggatcacctaaactaacttcttcctc 27949727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 23248355 - 23248389
Alignment:
Q  146 ggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    ||||||||||||| |||||||||||||||||||||    
T  23248355 ggtgcaatgtggtccatacaaaagaatcctatgct 23248389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 24854860 - 24854820
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||| |||||||||||| ||||||| ||||||    
T  24854860 tagcacattatcagggatcatctaaattaacttcgtcctcc 24854820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 49326683 - 49326389
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||     
T  49326683 tcagcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggtgttgaagttgaaaaccggagaggatgtatttatagaggtcc 49326584  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||    
T  49326583 ttggatgttgcggaccacataaactcttggtgcaatgtggtccatacaaaagaatcctatgctgaggtattctagatttcgttttccagaacacacatac 49326484  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||||| || |||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49326483 gccctaggcaagtccggatttggtaatccgaaaagcatatctttggttattttatcgaataaatgaatatatttgacgtaaattaaaacataatg 49326389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 48062956 - 48063246
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||||||||| |||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||  ||||||||||||||||| ||||    
T  48062956 cttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttaatggtgttgaagctgaaaaccggagagaatgtatttatagaggtccttgg 48063055  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccc 221  Q
    |||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||   |||||||||||   |||||||||||||||    
T  48063056 atgtcgtggaccacataaactcttggtgcaatgtggtccatacaaaagaatcctatgctgaggtattctggatttcgttttctggaacacacatacgccc 48063155  T
Q  222 taggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48063156 taggcaaatccggatttcgtaatccgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 48063246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 41973938 - 41973668
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||| ||||| |||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||     
T  41973938 tcagcttaatgataaaaatttgcatgttattctttgttgtgtttgtgtgttttgatggtgttgaagctgaaaaccggagaagatgtatttataaaggtcc 41973839  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| ||||||||  ||||||| |||||| |||||||||||||| |||| | ||||||| || ||||||||||||  |||||||||||    
T  41973838 ttggatgttgtggaccacataaacttatggtgcagtgtggtccatacaaaagaatcttatgttgaggtatttcagatttcgttttccggaacacacatac 41973739  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacata 288  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41973738 gccctaggcaaatccggatttcgtaatccgaaaatcatatctttggttattttatcgaataaatgaacata 41973668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 47374134 - 47373840
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||     
T  47374134 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaatcggagaggatgtatttatagaggtcc 47374035  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||| ||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| | |||||||  |||||| |||||  |||||||||||    
T  47374034 ttggattttgtggatcacgtaaactcctggtgcaatgtggtccatacaaaagaatcctatgctgacgtattccggatttcgatttccggaacacacatac 47373935  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  47373934 gccctaggcaaatccggatttcgtaatccgaaaagcatatctttggttattttatcgaataaatgaacatattttatgtaaattaaaacgtaatg 47373840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 44207124 - 44206830
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| |||||||||| ||||||| ||||||||| |||||  ||| ||| ||||||||||||||     
T  44207124 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttgtgatggtattgaagctggaaaccgaagaggatatatttatagaggtcc 44207025  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||| ||||| ||||||||| |||||||||||||| |||| |||||||||||||| | ||||||||   |||||||||| |  |||||||||||    
T  44207024 ttggatgttgaggaccacataaactcttggtgcaatgtggtccataaaaaagaatcctatgatgaggtattctggatttcgtttttcggaacacacatac 44206925  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206924 gccctaggcaaatccggattttgtaatccgaaaatcatttctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 44206830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 8485794 - 8485498
Alignment:
Q  20 agcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtcttt 119  Q
    ||||||||||||||||  ||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||| ||    
T  8485794 agcttaatgacaaaaatgtgcatggttttctttgttttgtttgtgtgttttgatggtgttgaagctgaaaaccagagagaatgtatttatatatgtcctt 8485695  T
Q  120 ggatgttgtggaccgcataa----actcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacat 215  Q
    |||||||||||||| |||||    |||| |||||||||||||| |||||||||||||  ||||||||||||||||  ||||||||||||  |||||||||    
T  8485694 ggatgttgtggaccacataattaaactcttggtgcaatgtggtccatacaaaagaattatatgctaaggtattccggatttcgttttccggaacacacat 8485595  T
Q  216 acgccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||| ||| || |||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  8485594 acgccctagacaattccggatttcgtaatccgaaaagcatatctttcgttattttatctaataaatgaacatatttcacgtaaattaaaacataatg 8485498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 16483621 - 16483917
Alignment:
Q  16 catcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggt 115  Q
    |||||||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||  |||| |||||||||||||||||    
T  16483621 catcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaactggagaggatgtatttatagaggt 16483720  T
Q  116 ctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacat 215  Q
    | |||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||   |||||||||||   ||||||| |    
T  16483721 ccttggatgttgtggacaacataaactcatggtgcaatgtggtccatacaaaagaatcctatgctgaggtattctggatttcgttttctggaacacactt 16483820  T
Q  216 acgccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||||  |||| |||||||||||| | ||||   |||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  16483821 acgccctaggtcaatccggatttcgtaatccaaaaaggttatctttgattattttatcgattaaacgaacatttttgacgtaaattaaaacataatg 16483917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 30389685 - 30389911
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||     
T  30389685 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaaccggagatgatgtatttatagaggtca 30389784  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||  |||||||||| |  |||||||||||    
T  30389785 ttggatgttgtggaccacataaactcttggtgcaatgtggtccatacaaaagaatcctatgctgaggtattccggatttcgtttttcggaacacacatac 30389884  T
Q  218 gccctaggcaaatctggatttcgtaat 244  Q
    |||||||||||||| ||||||||||||    
T  30389885 gccctaggcaaatccggatttcgtaat 30389911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 100 - 312
Target Start/End: Complemental strand, 21449943 - 21449731
Alignment:
Q  100 atgtatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgt 199  Q
    ||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||| |||||||||||||| |||||| |||||||||  |||||||    
T  21449943 atgtatttatagaggtccttggatgttgtggaccacatagactcttggtgcaatgtggtccatacaaaagaatcatatgctgaggtattccggatttcgt 21449844  T
Q  200 tttccataacacacatacgccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaa 299  Q
    |||||| ||||||||||||||||||||||||  | |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  21449843 tttccagaacacacatacgccctaggcaaattcgaatttcgtaatccgaaaagcatatctttggttattttatcgaataaatgaacatatttaacgtaaa 21449744  T
Q  300 ttaaaacataatg 312  Q
    |||||||||||||    
T  21449743 ttaaaacataatg 21449731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 21979255 - 21978965
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| ||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||     
T  21979255 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgctggtattgaagctgaaaaccagagagggtgtatttatagaggtca 21979156  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||| ||||||||||| |||||| || ||||||||| |||| |||||||||||||| |||||| |||||||||  |||| |||||||  ||||||| |||    
T  21979155 ttggctgttgtggaccacataaaatcttggtgcaatatggtccatacaaaagaatcatatgctgaggtattccggattttgttttccggaacacacttac 21979056  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacat 308  Q
    ||| ||||  |||| | ||| | |||| |||||| |||||||||| |||||||||||| || |||||||| ||||||||||||||||||||    
T  21979055 gccttaggtgaatccgaattccataatccgaaaagcatatctttgtttattttatcgattagatgaacatttttgacgtaaattaaaacat 21978965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 22001686 - 22001396
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| ||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||     
T  22001686 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgctggtattgaagctgaaaaccagagagggtgtatttatagaggtca 22001587  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||| ||||||||||| |||||| || ||||||||| |||| |||||||||||||| |||||| |||||||||  |||| |||||||  ||||||| |||    
T  22001586 ttggctgttgtggaccacataaaatcttggtgcaatatggtccatacaaaagaatcatatgctgaggtattccggattttgttttccggaacacacttac 22001487  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacat 308  Q
    ||| ||||  |||| | ||| | |||| |||||| |||||||||| |||||||||||| || |||||||| ||||||||||||||||||||    
T  22001486 gccttaggtgaatccgaattccataatccgaaaagcatatctttgtttattttatcgattagatgaacatttttgacgtaaattaaaacat 22001396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 148 - 309
Target Start/End: Complemental strand, 49440063 - 49439902
Alignment:
Q  148 tgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccctaggcaaatctggatttcgtaattcg 247  Q
    ||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| ||||  |    
T  49440063 tgcaatgtggtccatataaaagaatcctatgctgaggtattccagatttcgttttccggaacacacatacgccctaggcaaatctggatttcctaatctg 49439964  T
Q  248 aaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacata 309  Q
     |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49439963 gaaatcacatctttggttattttatcgaataaatgaacatatttaacgtaaattaaaacata 49439902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 10494014 - 10493849
Alignment:
Q  16 catcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggt 115  Q
    |||||||||||||||||||| |||| |||| |||||| |||| ||||||||||||| |||   ||||| |||||| | || || |  |||||||||||||    
T  10494014 catcagcttaatgacaaaaatttgcatggttttcttttttgtgtttgtgtgttttgttggaaatgaagatgaaaatcgga-aatacttatttatagaggt 10493916  T
Q  116 ctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaa 182  Q
    || |||| |||||||||| ||||||||   |||||| |||| | |||| ||||||||| ||||||||    
T  10493915 ctatggacgttgtggaccacataaactgtcggtgcattgtgatccatataaaagaatcatatgctaa 10493849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 18876893 - 18876999
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| | | ||||||| ||||| |||| ||| |||||||||||||||| | ||||||||||||||||     
T  18876893 tcagcttaatgacaaaaatttgcatggttttctttggtatgtttgtgtattttgctggtattgtagctgaaaaccagagagggtgtatttatagaggtca 18876992  T
Q  118 ttggatg 124  Q
    |||||||    
T  18876993 ttggatg 18876999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 18877019 - 18877090
Alignment:
Q  241 taattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||| |||||| ||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  18877019 taatccgaaaagcatatctttggttattttatcgattagatgaacatttttgatgtaaattaaaacataatg 18877090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 23334210 - 23334081
Alignment:
Q  47 ttctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttggatgttgtggaccgcataaactcctg 146  Q
    ||||||| ||| ||| ||||||||| |||   ||||| ||||||||||| ||  |  ||||| |||||| | |||| |||||||||| ||||||||   |    
T  23334210 ttctttggtgtgtttatgtgttttgctggaaatgaagatgaaaaccagaaaactt--atttacagaggtatctggacgttgtggaccacataaactatcg 23334113  T
Q  147 gtgcaatgtggtgcatacaaaagaatcctatg 178  Q
    |||||||||||| |||||||||||||||||||    
T  23334112 gtgcaatgtggtccatacaaaagaatcctatg 23334081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 49326278 - 49326238
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49326278 tagcacattatcacggatcatctaaactaacttcttcctcc 49326238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 9331528 - 9331585
Alignment:
Q  253 catatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataa 310  Q
    ||||| ||||||||||||||||| ||||||||||| ||| |||||||||| |||||||    
T  9331528 catatatttggttattttatcgattaaatgaacatctttaacgtaaattagaacataa 9331585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 21449617 - 21449580
Alignment:
Q  388 cacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21449617 cacattatcacggatcatctaaactaacttcttcctcc 21449580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 41973589 - 41973552
Alignment:
Q  388 cacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41973589 cacattatcacggatcatctaaactaacttcttcctcc 41973552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 18877200 - 18877240
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  18877200 tagcacattatcacggatcatctaaactaactacttcctcc 18877240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 21978852 - 21978812
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  21978852 tagcatattatcacggatcatctaaactaacttcttcctcc 21978812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 22001283 - 22001243
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  22001283 tagcatattatcacggatcatctaaactaacttcttcctcc 22001243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 44206673 - 44206633
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  44206673 tagcacattatcacggatcatctaaactaacttctacctcc 44206633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 9128027 - 9128076
Alignment:
Q  263 gttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||| |||||    
T  9128027 gttattttaacgattaaatgaacatctttgacgtaaattaaaacgtaatg 9128076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 9136134 - 9136183
Alignment:
Q  263 gttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||| |||||    
T  9136134 gttattttaacgattaaatgaacatctttgacgtaaattaaaacgtaatg 9136183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 9331698 - 9331737
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctc 424  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  9331698 tagcacattatcacagataatctaaactaacttcttcctc 9331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 8485385 - 8485349
Alignment:
Q  389 acattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  8485385 acattgtcacggatcatctaaactaactttttcctcc 8485349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 47373731 - 47373691
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||| ||||| |||||||||||| ||||||||    
T  47373731 tagcacattatcatggatcgtctaaactaactacttcctcc 47373691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 48063401 - 48063433
Alignment:
Q  393 tatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||| ||||||||||||||||||||||||||    
T  48063401 tatcacagatcatctaaactaacttcttcctcc 48063433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 24831520 - 24831814
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    ||||||||||||||||||||| | || ||||||||||||| |||||||||| | |||||||||||||| |||||| |||| |||||||||||||||||||    
T  24831520 tcagcttaatgacaaaaaatttcatgatattctttgttgtgtttgtgtgttctaatggtgttgaagctaaaaaccggagaggatgtatttatagaggtct 24831619  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |||||||||  ||||||||||||  |||||| |||     
T  24831620 ttggatgttgtggaccgcataaactcctagtgcaatgtggtccatacaaaagaatcttatgctgaggtattccggatttcgttttccggaacacagataa 24831719  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  24831720 gccctaggcatatccggatttcgtaatccgaaaatcatatctttggttattttattgaatatatgaacatatttgacgtaaattaaaacataatg 24831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 11094 - 10808
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||      
T  11094 tcagcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggtgttgaagctgaaaaccggataagatgtatttatagaggttc 10995  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    || ||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||| ||||| |||||||||  ||||||||||||  |||||||||||    
T  10994 ttcgatgttgtggaccacataaactcttggtgcaatgcggtccatacaaaagaatccaatgctgaggtattccggatttcgttttccggaacacacatac 10895  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||| ||||||||||       |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10894 gccataggcaaatc-------cgtaatccgaaaatcatatatttggttattttatcgaataaatgaacatatttgacgt-aattaaaacataatg 10808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 41835450 - 41835604
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    ||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| |||| ||||||||||||| | |||| | ||||||||||||||||     
T  41835450 tcagcttaatgacaaaaaattgcatggttttctttggtgtgtttgtgtgttttgctggtattgaagctgaaaatcggagagggtgtatttatagaggtcc 41835549  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaat 172  Q
    |||||||||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  41835550 ttggatgttgtggaccacataaacttttggtgcaatgtggtccatacaaaagaat 41835604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 11457716 - 11457793
Alignment:
Q  103 tatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    ||||||||||||||| |||| |||||||||| |||||| |   |||||| |||||| |||||||||||||||||||||    
T  11457716 tatttatagaggtctctggacgttgtggaccacataaattgtcggtgcattgtggtccatacaaaagaatcctatgct 11457793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 41835845 - 41835884
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctc 424  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  41835845 tagcacattatcacggatcatctaaactaccttcttcctc 41835884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 41835676 - 41835734
Alignment:
Q  254 atatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||| | |||||||||  ||||||||||||| |||||| |||||||||||||||||    
T  41835676 atatcttcgattattttatataataaatgaacatctttgacataaattaaaacataatg 41835734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 10694 - 10657
Alignment:
Q  388 cacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||||||||||||||||||| |||||||    
T  10694 cacattatcacggatcatctaaactaacttattcctcc 10657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 18277285 - 18277575
Alignment:
Q  21 gcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttg 120  Q
    ||||||||||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||| |||    
T  18277285 gcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggtgttgaagctgaaaacaggagaggatggatttatagaggtccttg 18277384  T
Q  121 gatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgcc 220  Q
    ||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||| | |||||||||| ||||||||||||  ||||||||||||||    
T  18277385 gatgttgtggaccacataaactcttggtgcaatgtg-tccatacaaaagaatcctatgatgaggtattccagatttcgttttccggaacacacatacgcc 18277483  T
Q  221 ctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  18277484 ctaggcaaatccggagttcgtaatccgaaaagcatatctttggttattttatcgaataaataaacatatttgacgtaaattaaaatataatg 18277575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 39598980 - 39599272
Alignment:
Q  20 agcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtcttt 119  Q
    ||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||| | |||| |||||||||||||||||| ||    
T  39598980 agcttaatgacaaaaaattgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaatcggagaggatgtatttatagaggtcatt 39599079  T
Q  120 ggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgc 219  Q
    ||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||| |||||||||  ||||||||||||| ||||||| |||||    
T  39599080 ggatgttgtgggccacataaactcctggtgcaatgtggtccatacaaaagaatcatatgctgaggtattccggatttcgttttccagaacacacttacgc 39599179  T
Q  220 cctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    | ||||  |||  |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39599180 cataggtcaattcggatttcgtaattcgaaaagtatatctttggttattttatcgattaaatgaacatatttgacgtaaattaaaacataatg 39599272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 5749277 - 5748983
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||  ||| ||| ||||||||||||||     
T  5749277 tcagcttaatgacaaaaatttgcatggttttctttgttgtatttgtgtgtttttatggtgttgaagctgaaaaccgaagaggatatatttatagaggtcc 5749178  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| |||||| || |||||||||||||| | |||||||||||| |||||| |||||||||  ||||| ||||||  |||||||||||    
T  5749177 ttggatgttgtggaccacataaattcttggtgcaatgtggtacgtacaaaagaatcttatgctgaggtattccggatttcattttccggaacacacatac 5749078  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  5749077 gccctaggtaaatccggatttcgtaatccgaaaaccatatctttggttattttatcgattaaatgaacatattttacgtaaattaaaacataatg 5748983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 3474633 - 3474339
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||| || | |||||||||||| |||||     
T  3474633 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaaccggaaaggatgtatttataaaggtca 3474534  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||  |||| | |||||||||  |||||| ||||   |||||||||||    
T  3474533 ttggatgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaattatatgttgaggtattccggatttcgatttctggaacacacatac 3474434  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||||||||  |||||||| || ||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3474433 gccctaggcaaatccagatttcgtgatccgaaaaaaatatctttggttattttattgaataaatgaacatatttgacgtaaattaaaacataatg 3474339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 4852108 - 4852397
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| || | ||||||||||| ||||||  ||||||||||||||||||| |||||  ||||  |||||||||||||||||     
T  4852108 tcagcttaatgacaaaaatttgcatgcttttctttgttgtgtttgtgcattttgatggtgttgaagctaaaaactggagagaatgtatttatagaggtca 4852207  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    ||||||||| |||||| ||||||||| |||  |||||||||  |||||||||||||||||||| |||||||||  ||||||||||||  |||||||||||    
T  4852208 ttggatgttatggaccacataaactcttgggacaatgtggtctatacaaaagaatcctatgctgaggtattccggatttcgttttccgaaacacacatac 4852307  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacat 308  Q
    ||||||| |||||| |||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  4852308 gccctagacaaatccggatttcgtaatccgaaaagcatatctttgattattttatcg-ataaatgaacatatttgacgtaaataaaaacat 4852397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 122 - 312
Target Start/End: Complemental strand, 10222507 - 10222317
Alignment:
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccc 221  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||  ||||||||||||  |||||||||||||||    
T  10222507 atgttgtggaccacataaactcctggtgcaatgtggcccatacaaaagaatcctatgctgaggtattccggatttcgttttccggaacacacatacgccc 10222408  T
Q  222 taggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10222407 taggcaaatccggatttcgtaatccgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 10222317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 14271096 - 14271322
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||  ||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||     
T  14271096 tcagcttaatgacaaaaatttgcatggttttcttttgtgtgtttgtgtgttttgatggtattgaagctgaaaaccggagaaaatgtatttatagaggtcc 14271195  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    ||||||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||||||| | |||||||||  ||||||||||||  |||||||||||    
T  14271196 ttggatgttgtagaccacataaactcttggtgcaatctggtccatacaaaagaatcctatgttgaggtattccggatttcgttttccggaacacacatac 14271295  T
Q  218 gccctaggcaaatctggatttcgtaat 244  Q
    |||||||||||||| ||||||||||||    
T  14271296 gccctaggcaaatccggatttcgtaat 14271322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 30517753 - 30517459
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| || | ||||||| ||| ||||||||||||| | || ||||||||||||| ||||||  |  ||||||||||||||     
T  30517753 tcagcttaatgacaaaaatttgcatgattttctttggtgtgtttgtgtgttttgctagtattgaagctgaaaaacagagagcacttatttatagaggtcc 30517654  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||||||||||||| |||||| | |||||||  |||| ||  ||   ||||||| |||    
T  30517653 ttggatgttgtggaccatataaactcttggtgcaatgtggtccatacaaaagaatcatatgctgaagtattccggatttagtaatcaggaacacacttac 30517554  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||| |  |||| ||||||| ||||  | ||  ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  30517553 gccctatgtgaatccggatttcataatctggaatgcatatctttggttattttatcgattaaatgaacatttttgacgtaaatttaaacataatg 30517459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 10311965 - 10311794
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||     
T  10311965 tcagcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggtgttgaagctgaaaaccggggatgatgtatttatagagatca 10311866  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattc 189  Q
    |||||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||    
T  10311865 ttggatgttgtggaccacataaactcttggtgcaatgtggtctatacaaaagaatcctatgctgaggtattc 10311794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 7563924 - 7563630
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    ||||||||||||||| || |||| |||| |||||||  || ||||||||||||  |||| ||||||||||||| |||||| | ||||||||||||||||     
T  7563924 tcagcttaatgacaagaatttgcatggttttctttggggtgtttgtgtgtttttctggtattgaagctgaaaatcagagagggtgtatttatagaggtcc 7563825  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||| | | |  ||||  | ||||   | |  || |||| |||    
T  7563824 ttggatgttgtggaccacataaactcttggtgcaatgtggtccatacaaaaggatcctatgatgatgctttccggaattcgaaattcggaatacacttac 7563725  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    || ||| | ||||| ||||||  |||| ||||   ||||| ||   |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  7563724 gctctatgtaaatccggattttataatccgaactacatatattcaattattttatcgattaaatgaacatctttgacgtaaattaaaacataatg 7563630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 12524278 - 12524116
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||     
T  12524278 tcagcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggtgttgaagctgaaaaccggagaggatgtatttataaaggtcc 12524179  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    ||||||||||||||||  ||||||||  ||||||||||||   | |||||||||||| |||||    
T  12524178 ttggatgttgtggaccatataaactctcggtgcaatgtgggaaacacaaaagaatccaatgct 12524116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 6605106 - 6604955
Alignment:
Q  28 gacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttggatgttg 127  Q
    |||||||| |||| |||| ||||||| | | ||||||||||||| |||| ||||||||||||||| || |   |||||||||||||||| ||||||||||    
T  6605106 gacaaaaatttgcatggt-ttctttgatttgtttgtgtgttttgctggtattgaagctgaaaaccggacatagtgtatttatagaggtccttggatgttg 6605008  T
Q  128 tggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    |||||| ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  6605007 tggaccacataaactcttggtgcaatgttgtccatacaaaagaattctatgct 6604955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 22334610 - 22334531
Alignment:
Q  233 ggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22334610 ggatttcgtaatccgaaaagcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 22334531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 10222588 - 10222512
Alignment:
Q  16 catcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaacc 92  Q
    |||||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  10222588 catcagcttaatgacaaaaatttgcatgatattctttgttgtgtttgtgtgttttgatggtgttgaaactgaaaacc 10222512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 17385038 - 17384983
Alignment:
Q  257 tctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  17385038 tctttggttattttatcgattaaatgaacatctttgacgtaaattaaaatataatg 17384983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 4852531 - 4852571
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4852531 tagcacattatcacggatcatctaaactaacttcttcctcc 4852571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 22334420 - 22334380
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22334420 tagcacattatcacggatcatctaaactaacttcttcctcc 22334380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 18277689 - 18277726
Alignment:
Q  388 cacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18277689 cacattatcacggatcatctaaactaacttcttcctcc 18277726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 39599381 - 39599421
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  39599381 tagcacattttcacggatcatctaaactaacttcttcctcc 39599421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 424
Target Start/End: Complemental strand, 17384862 - 17384823
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctc 424  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  17384862 tagcacattatcacagatcatctaaactaacttcttcctc 17384823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 41367700 - 41367775
Alignment:
Q  103 tatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatg 178  Q
    ||||||||||||||| |||| |||||||| |  |||||||  ||||||| |||||| |||||||||||||| ||||    
T  41367700 tatttatagaggtctctggacgttgtggagcatataaactgttggtgcattgtggtccatacaaaagaatcatatg 41367775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 10311660 - 10311620
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  10311660 tagcacattatcacggatcatataaacaaacttcttcctcc 10311620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 421
Target Start/End: Complemental strand, 5748813 - 5748778
Alignment:
Q  386 agcacattatcacggatcatctaaactaacttcttc 421  Q
    |||||||||||| |||||||||||||||||||||||    
T  5748813 agcacattatcatggatcatctaaactaacttcttc 5748778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 30516810 - 30516756
Alignment:
Q  103 tatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtgg 157  Q
    ||||||||||| | |||||  |||||||||| ||||||||| |||||||||||||    
T  30516810 tatttatagagttatttgggcgttgtggaccacataaactcttggtgcaatgtgg 30516756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 10222203 - 10222166
Alignment:
Q  388 cacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  10222203 cacattgtcacggatcatctaaactaatttcttcctcc 10222166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 13037653 - 13037946
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||| ||| |||| ||||||||||| |||| |||||||||||||||||| |||||| |||||||| |||| | ||||||| || |||||     
T  13037653 tcagcttaatgacataaatttgcatggtattcttttttgtgtttgtgtgttttgatggtattgaagttgaaaaccggagagggtgtatttttaaaggtcc 13037752  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||   ||||| ||||||  |||||||| ||    
T  13037753 ttggatgttgtggaccacataaactcctggtgcaatgtggtccatacaaaagaatcctatgctgaggtattctggatttcattttccggaacacacacac 13037852  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataat 311  Q
    |||||||||||||  |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13037853 gccctaggcaaattcggatttcgtaatccgaaaatcctatctttgtttattttatcgaataaatgaacatatttgacgtaaattaaaacataat 13037946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 422
Target Start/End: Original strand, 13038081 - 13038118
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcc 422  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13038081 tagcacattatcacggatcatctaaactaacttcttcc 13038118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 424
Target Start/End: Complemental strand, 12304206 - 12304167
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctc 424  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  12304206 tagcacattatcacagataatctaaactaacttcttcctc 12304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 19624743 - 19624818
Alignment:
Q  103 tatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatg 178  Q
    ||||||||||| | | |||| || ||||||||||||||||   ||||||||||||  ||||||||| |||||||||    
T  19624743 tatttatagagatatctggacgtcgtggaccgcataaactatcggtgcaatgtggatcatacaaaataatcctatg 19624818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 34950046 - 34950083
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcct 423  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  34950046 tagcacattatcacggatcat-taaactaacttcttcct 34950083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 5463750 - 5463456
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    ||||||||||||||||||  ||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||      
T  5463750 tcagcttaatgacaaaaatatgcatggttttctttggtgtgtttgtgtgttttgatggtattgaagctgaaaaccggagaggatgtatttatagatgtgc 5463651  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| ||| ||||| || || | |||||| |||||||||||||| |||| | |||||||||  ||||||||||||| |||||||||||    
T  5463650 ttggatgttgtggaccacatgaactcttgttgtagtgtggtccatacaaaagaatcatatgttgaggtattccgaatttcgttttccagaacacacatac 5463551  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    | ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5463550 gtcctaggcaaatccagatttcgtaatccgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 5463456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 15112708 - 15112418
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||||||||| |||| |||| ||||||| ||| |||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||    
T  15112708 cttaatgacaaaaatttgcatggttttctttggtgtgtttgcgtgttttgatggtattgaagctgaaaaccggagatgatgtatttatagaggtccttgg 15112609  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatacgccc 221  Q
     ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||  |||||||||| |  | ||||| |||||||    
T  15112608 gtgttgtggaccacataaactcttggtgcaatgtggtccatacaaaagaatcctatgttgaggtattccgaatttcgtttttcggatcacacgtacgccc 15112509  T
Q  222 taggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||| | ||  ||||||| |||| |||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  15112508 taggtatattcggatttcataatccgaaaagcatatcttcggttattttatcgattaaatgaacatatttaacgtaaattaaaacataatg 15112418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 41962433 - 41962595
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||  |||| |||| ||||||| ||| ||||| |||||||||  | ||||||||||||||| |||| ||||||||||||||||||     
T  41962433 tcagcttaatgacaaaagtttgcatggttttctttggtgtgtttgtatgttttgattttattgaagctgaaaaccggagatgatgtatttatagaggtcc 41962532  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||    
T  41962533 ttggatgttgtggaccacataaactcctcgtgcaatgtggtccatacaaaagaatccaatgct 41962595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 34949234 - 34949395
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||| ||| ||||||||||||| |||| |||| |||||||| | |||| | ||||||||||||||||     
T  34949234 tcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgctggtattga-gctgaaaatcggagagggtgtatttatagaggtca 34949332  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||||||    
T  34949333 ttggatgttgtggaccacataaactcttggtgcaatgtggtccatacaaaaggatcctatgct 34949395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 45536335 - 45536495
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||||||   || ||||||||||||| |||| |||||||| |||||| |||| | ||||||| ||||||||     
T  45536335 tcagcttaatgacaaaaatttgcatggttttctttagcgtgtttgtgtgttttgctggtattgaagctaaaaaccggagagggtgtatttgtagaggtcc 45536434  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatg 178  Q
    |||||||||||||||| ||| ||||| |||||||||||||| ||||||||| |||||||||    
T  45536435 ttggatgttgtggaccacattaactcttggtgcaatgtggtccatacaaaataatcctatg 45536495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 5937756 - 5937605
Alignment:
Q  16 catcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggt 115  Q
    ||||| |||||||| ||||| |||| |||| | ||||| ||| || |||||||||| |||| ||||| ||||||| | |||| | |||||||||||||||    
T  5937756 catcaacttaatgataaaaatttgcatggtct-ctttgatgtgttcgtgtgttttgttggtattgaaactgaaaatcggagagggtgtatttatagaggt 5937658  T
Q  116 ctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaa 168  Q
    | |||||||||||||||| ||||||||| |||| ||||||||| |||||||||    
T  5937657 ccttggatgttgtggaccacataaactcttggtacaatgtggtccatacaaaa 5937605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 21484555 - 21484401
Alignment:
Q  22 cttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttgg 121  Q
    |||||||||||||  |||| |||| |||| || ||| ||||||||||||| ||    ||||| ||||||||||| || |  ||||||||||||||| |||    
T  21484555 cttaatgacaaaat-ttgcatggttttctgtggtgtgtttgtgtgttttgctgaaaatgaagatgaaaaccaga-aatacttatttatagaggtctctgg 21484458  T
Q  122 atgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatg 178  Q
    | |||||||||| |||||| |   |||||| |||||| |||||||||||||||||||    
T  21484457 acgttgtggaccacataaaatgtcggtgcattgtggtccatacaaaagaatcctatg 21484401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 5937299 - 5937259
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  5937299 tagcacattatcatggatcatctaaactaacttcttcctcc 5937259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 18964502 - 18964541
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctc 424  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  18964502 tagcacattataatggatcatctaaactaacttcttcctc 18964541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 18964356 - 18964390
Alignment:
Q  277 taaatgaacatatttgacgtaaattaaaacataat 311  Q
    ||||||||||| |||||||||||||||||||||||    
T  18964356 taaatgaacatctttgacgtaaattaaaacataat 18964390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 24169102 - 24169174
Alignment:
Q  25 aatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagaga 97  Q
    |||||||||||||| | |||| |||| || ||| ||||||| ||||| |||| ||||||||| ||||| ||||    
T  24169102 aatgacaaaaaatttcatggttttctatggtgtgtttgtgtattttgctggtattgaagctggaaaccggaga 24169174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 16352 - 16607
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||  | || |||| ||||||| ||| |||||  |||||||||||||||||||| |||||| || | |||||| |||||||||||     
T  16352 tcagcttaatgacaaaagttagcatggttttctttggtgtgtttgtaggttttgatggtgttgaagctaaaaaccggaaaggatgtacttatagaggtcc 16451  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaaggtattccatatttcgttttccataacacacatac 217  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||||  |||||||||||    
T  16452 ttggatgttgtggaccacataaactcttggtgcaatgtggtccatacaaaagaatcctatgctgaggtattccggatttcgttttccgaaacacacatac 16551  T
Q  218 gccctaggcaaatctggatttcgtaattcgaaaatcatatctttggttattttatc 273  Q
    |||||||||||||  | |||||||||| |||||| |||||||| ||||||||||||    
T  16552 gccctaggcaaattcgaatttcgtaatccgaaaagcatatcttcggttattttatc 16607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 16663 - 16703
Alignment:
Q  385 tagcacattatcacggatcatctaaactaacttcttcctcc 425  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  16663 tagcacattatcacagatcatctaaactaacttcttcctcc 16703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 18337 - 18172
Alignment:
Q  18 tcagcttaatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtct 117  Q
    |||||||||||||||||| |||| |||| ||| | | ||| ||||||||||||| |||   ||||| ||||| || || || |  |||||||||| ||||    
T  18337 tcagcttaatgacaaaaatttgcatggttttcctcggtgtgtttgtgtgttttgctggaaatgaagatgaaatcc-gaaaatacttatttatagaagtct 18239  T
Q  118 ttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgctaagg 184  Q
     ||||||||||||||| || ||| |   |||||| |||||| |||||||||||||||||||||||||    
T  18238 ctggatgttgtggaccacagaaaatatcggtgcattgtggtccatacaaaagaatcctatgctaagg 18172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 18111 - 18063
Alignment:
Q  264 ttattttatcgaataaatgaacatatttgacgtaaattaaaacataatg 312  Q
    |||||||| ||  ||||||||||||||||||||||| ||| ||||||||    
T  18111 ttattttagcgtttaaatgaacatatttgacgtaaagtaacacataatg 18063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 62354 - 62293
Alignment:
Q  119 tggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatgct 180  Q
    ||||||||||||||| ||||||  | |||||||||||||| |||||||||||||||||||||    
T  62354 tggatgttgtggaccacataaatccttggtgcaatgtggttcatacaaaagaatcctatgct 62293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 426661 - 426514
Alignment:
Q  25 aatgacaaaaaattgcctggtattctttgttgtatttgtgtgttttgatggtgttgaagctgaaaaccagagaagatgtatttatagaggtctttggatg 124  Q
    ||||||||||  || |||||| ||||||  ||| ||||||||||||| ||    ||||| ||||||||||| || |  ||||||||||||| | |||| |    
T  426661 aatgacaaaagttttcctggt-ttctttcgtgtgtttgtgtgttttgctgaaaatgaagatgaaaaccaga-aacacttatttatagaggtatctggacg 426564  T
Q  125 ttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcc 174  Q
    ||||||||| || |||||  |||||||||||||  |||||||||||||||    
T  426563 ttgtggaccacaaaaactattggtgcaatgtggaccatacaaaagaatcc 426514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 37285 - 37210
Alignment:
Q  103 tatttatagaggtctttggatgttgtggaccgcataaactcctggtgcaatgtggtgcatacaaaagaatcctatg 178  Q
    ||||||||||||||| ||||  ||||||| |  |||||||  ||||||| |||||| |||||||||||||| ||||    
T  37285 tatttatagaggtctctggacattgtggagcatataaactgttggtgcattgtggtccatacaaaagaatcatatg 37210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University