View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9183_high_16 (Length: 408)
Name: NF9183_high_16
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 44176466 - 44176850
Alignment:
| Q |
10 |
ggtgttaagaatgcaacaattttaaatcatttaaggaagttcaaccatcaattatggtttccaacccaattgaagttgtgcaaatatgatactcaacaac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44176466 |
ggtgttaagaatgcaacaattttaaatcatttaagaaagttcaaccatcaattatggtttccaacccaattgaagttgtgcaaatatgatactcaagaac |
44176565 |
T |
|
| Q |
110 |
aacaacaagcaactctcatctcaccaaatgagatagttgcatggatcatatcaagtcataatattctatcataaaccatatattctttatagtttttcta |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44176566 |
aacaacaagcaagtctcatctcaccaaatgagatagttatatggatcatatcaagtcataatattttatcataaaccatatattctttatagtttttcta |
44176665 |
T |
|
| Q |
210 |
aattttcgtctctattaaaatatgactatccttcttctgatttattatctttactaaagaatatgtcttttctctatatgcccaagctagataaatctat |
309 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
44176666 |
aattttcgtctctattaaaatataactatccttcttctgatttattatctttactaaaaaatatgtcttttctctatatgcccaaactacataaatctat |
44176765 |
T |
|
| Q |
310 |
tttcaccatcttttctactataaac-----nnnnnnnnnntgacttttatagtgtagtactatagtatctatgagaggtgccagt |
389 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44176766 |
tttcaccatcttttctactataaaccaaaaaaaaaatatatgacttttatagtgtagtactatagtatctatgagaggtgccagt |
44176850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 26332915 - 26332956
Alignment:
| Q |
149 |
catggatcatatcaagtcataatattctatcataaaccatat |
190 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
26332915 |
catggatcaaattacgtcataatattctatcataaaccatat |
26332956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 30588687 - 30588646
Alignment:
| Q |
149 |
catggatcatatcaagtcataatattctatcataaaccatat |
190 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
30588687 |
catggatcatatcacgtcataatgttctattataaaccatat |
30588646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 33512878 - 33512849
Alignment:
| Q |
159 |
atcaagtcataatattctatcataaaccat |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33512878 |
atcaagtcataatattctatcataaaccat |
33512849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University