View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_high_17 (Length: 404)

Name: NF9183_high_17
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_high_17
NF9183_high_17
[»] chr5 (15 HSPs)
chr5 (154-385)||(37439639-37439868)
chr5 (258-385)||(37434382-37434508)
chr5 (154-256)||(37701309-37701409)
chr5 (14-105)||(41966065-41966156)
chr5 (225-385)||(37402360-37402520)
chr5 (225-385)||(37531738-37531898)
chr5 (225-385)||(37592842-37593002)
chr5 (225-385)||(37695233-37695393)
chr5 (308-389)||(37701410-37701491)
chr5 (264-385)||(37394248-37394368)
chr5 (225-389)||(37638384-37638548)
chr5 (225-389)||(37710145-37710309)
chr5 (248-389)||(37427715-37427852)
chr5 (265-389)||(37822583-37822706)
chr5 (101-134)||(37701257-37701290)
[»] chr3 (1 HSPs)
chr3 (14-103)||(1227450-1227538)
[»] chr4 (1 HSPs)
chr4 (225-389)||(16844354-16844518)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 9e-83; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 154 - 385
Target Start/End: Original strand, 37439639 - 37439868
Alignment:
Q  154 tataagactacattacttaaacagagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg 253  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  37439639 tataagactacattactcaaacagagaagttcaaattacaaacaaccgtatctatattttttaaagacttgcatcaaattaattcattctatgtgatttg 37439738  T
Q  254 cacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaatacattat 353  Q
    || ||  ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||| |||||    
T  37439739 caagggatcaattgtttgttcttttcagtctt-atgttaaatgtatgc-caacaagtctaagaagtcattcaggttttccagtgaagaagaatagattat 37439836  T
Q  354 atcccaacagcaacccgaatattgtcccacat 385  Q
    ||||||| |||||||||||||||| |||||||    
T  37439837 atcccaatagcaacccgaatattgccccacat 37439868  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 37434382 - 37434508
Alignment:
Q  258 gactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaatacattatatcc 357  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  37434382 gactcaattgtttgttcttttcattctta-tgttaaacgtatgctcaacaagtctaagaagccattggggttttccagtgaagaagaatacattatatcc 37434480  T
Q  358 caacagcaacccgaatattgtcccacat 385  Q
    |||||||||||| ||||||| |||||||    
T  37434481 caacagcaacccaaatattgccccacat 37434508  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 37701309 - 37701409
Alignment:
Q  154 tataagactacattacttaaacagagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg 253  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37701309 tataagactacattactcaaa--gagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg 37701406  T
Q  254 cac 256  Q
    |||    
T  37701407 cac 37701409  T

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Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 41966156 - 41966065
Alignment:
Q  14 aggagcagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatccttagtatcttgattataat 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966156 aggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatccttagtatcttgattataat 41966065  T

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Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 385
Target Start/End: Complemental strand, 37402520 - 37402360
Alignment:
Q  225 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 323  Q
    ||||||||||||||||||| | ||||||||||| |  ||  |||||||||||||||||||||| |||||||  | |  ||||||| ||||| ||||||||    
T  37402520 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtctta-tgttaaacatgttttcaacaattctaacaagccatt 37402422  T
Q  324 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattgtcccacat 385  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| |||||| |||||||    
T  37402421 gaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacat 37402360  T

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Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 385
Target Start/End: Original strand, 37531738 - 37531898
Alignment:
Q  225 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 323  Q
    ||||||||||||||||||| | ||||||||||| |  ||  |||||||||||||||||||||| |||||||  | |  ||||||| ||||| ||||||||    
T  37531738 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtctta-tgttaaacatgttttcaacaattctaacaagccatt 37531836  T
Q  324 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattgtcccacat 385  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| |||||| |||||||    
T  37531837 gaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacat 37531898  T

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Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 385
Target Start/End: Original strand, 37592842 - 37593002
Alignment:
Q  225 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 323  Q
    ||||||||||||||||||| | ||||||||||| |  ||  |||||||||||||||||||||| |||||||  | |  ||||||| ||||| ||||||||    
T  37592842 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtctta-tgttaaacatgttttcaacaattctaacaagccatt 37592940  T
Q  324 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattgtcccacat 385  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| |||||| |||||||    
T  37592941 gaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacat 37593002  T

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Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 385
Target Start/End: Original strand, 37695233 - 37695393
Alignment:
Q  225 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 323  Q
    ||||||||||||||||||| | ||||||||||| |  ||  |||||||||||||||||||||| |||||||  | |  ||||||| ||||| ||||||||    
T  37695233 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtctta-tgttaaacatgttttcaacaattctaacaagccatt 37695331  T
Q  324 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattgtcccacat 385  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| |||||| |||||||    
T  37695332 gaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacat 37695393  T

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Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 37701410 - 37701491
Alignment:
Q  308 agtctaagaagccattgaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattgtcccacatgcat 389  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||    
T  37701410 agtctaagaagccattgaggttttccagtgaagaagaatacattatatcccaagagcaacccgaatattgccccacatgcat 37701491  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 264 - 385
Target Start/End: Complemental strand, 37394368 - 37394248
Alignment:
Q  264 attgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaatacattatatcccaacag 363  Q
    |||||||| |||||||| ||||| |||||||  |||  |||||| ||||   ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  37394368 attgtttgatcttttcaatctta-tgttaaacatattttcaacatgtcttgcaagccattggggttttccagtgaagaagaatacattatatcccaacag 37394270  T
Q  364 caacccgaatattgtcccacat 385  Q
    ||||||  |||||| |||||||    
T  37394269 caacccatatattgccccacat 37394248  T

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Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 37638384 - 37638548
Alignment:
Q  225 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 323  Q
    |||| |||||||||||||| | |||||||||   | |||  ||||| |||||||||| ||||| ||| |||  |||| |||||| ||||   ||||||||    
T  37638384 catccaattaattcattcttctgcgatttgcgatggctctgttgttcgttcttttcaatctta-tgtcaaacatatgttcaacatgtcttgcaagccatt 37638482  T
Q  324 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattgtcccacatgcat 389  Q
      ||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||    
T  37638483 cgggtttaccagtgaagaagaatacattatatcccaatagcaacccgaatattgccccacatgcat 37638548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 37710145 - 37710309
Alignment:
Q  225 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 323  Q
    |||| |||||||||||||| | |||||||||   | |||  |||||||||||||||| ||||| ||| |||  |||| |||||| |||| | ||||||||    
T  37710145 catccaattaattcattcttctgcgatttgcgatggctctgttgtttgttcttttcaatctta-tgtcaaacatatgttcaacatgtcttacaagccatt 37710243  T
Q  324 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattgtcccacatgcat 389  Q
      ||||| || ||||| ||||||||||||||||| || |||||||||||||||| |||||||||||    
T  37710244 cgggtttaccggtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcat 37710309  T

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Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 389
Target Start/End: Original strand, 37427715 - 37427852
Alignment:
Q  248 gatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaata 347  Q
    ||||||||||| ||| | ||||||||||||||| ||||| |||||||||| ||||||| |||||||| || |||||  ||||| ||| ||||   || ||    
T  37427715 gatttgcacgggctctagtgtttgttcttttcaatctta-tgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatgaa---gagta 37427810  T
Q  348 cattatatcccaacagcaacccgaatattgtcccacatgcat 389  Q
    || |||||||||| | || ||| |||||||||||||||||||    
T  37427811 caatatatcccaagatcatcccaaatattgtcccacatgcat 37427852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 37822583 - 37822706
Alignment:
Q  265 ttgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaatacattatatcccaacagc 364  Q
    ||||| |||||||||| ||||| ||| |||  |||| |||||| ||||   ||||||||  ||||| |||||||| ||||||||||||||||| || |||    
T  37822583 ttgttcgttcttttcaatctta-tgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattatatccgaatagc 37822681  T
Q  365 aacccgaatattgtcccacatgcat 389  Q
    |||||||| |||| |||||||||||    
T  37822682 aacccgaagattgccccacatgcat 37822706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 37701257 - 37701290
Alignment:
Q  101 ataataattttaaaagatataagactactctgtc 134  Q
    ||||||||||||||||||||||||||||||||||    
T  37701257 ataataattttaaaagatataagactactctgtc 37701290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 1227538 - 1227450
Alignment:
Q  14 aggagcagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatccttagtatcttgattata 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||    
T  1227538 aggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtgttgaa-ccttagtatctagattata 1227450  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 389
Target Start/End: Complemental strand, 16844518 - 16844354
Alignment:
Q  225 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 323  Q
    |||| |||||||||||||| |||||||||||     |||  ||| |||||||||||| ||||| |||||||  || | |||||| ||||   ||| ||||    
T  16844518 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatctta-tgttaaacatacgttcaacatgtcttgcaaggcatt 16844420  T
Q  324 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattgtcccacatgcat 389  Q
    | |||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||||||    
T  16844419 ggggttttccagtgaagaagaatacattatatcccaagagcaacccgaatattgcaccacatgcat 16844354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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