View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_high_20 (Length: 357)
Name: NF9183_high_20
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 22 - 339
Target Start/End: Original strand, 9699779 - 9700096
Alignment:
| Q |
22 |
cataacagatttcggggaagaaccaaaagaaagaccagagcaaatggcacaagcaaccatgataatgagtgtgacaccataaactttcttgcgtccaagt |
121 |
Q |
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| T |
9699779 |
cataacagatttcgcggaagaaccaaaagaaagaccagagcaaatggcacaagcaaccatgataatgagtgtgacaccataaactttcttgcgtccaagt |
9699878 |
T |
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| Q |
122 |
ttgtctccgagccagccgaagactaattggccagaaagtgttccgacaagggccacaccggtgactaagttattaattgttggtggaagcttccctggtt |
221 |
Q |
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| T |
9699879 |
ttgtctccgagccagccgaagactaattggccagaaagtgttccgacaagggccacaccggtgactacattattaactgatggtggaagcttccctggtt |
9699978 |
T |
|
| Q |
222 |
tgttagtgcttggatcaaagtaatataatcgtcccaagagcttcgaaacggttgaaatgcagaacagatcataggcatcagtgaagaatcccatgccagc |
321 |
Q |
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| T |
9699979 |
tgttagtgcttggatcaaagtaatataatcgtcccaagagcttcgaaacggttgaaatgcagaacagatcataggcatcagtgaagaatcccatgccagc |
9700078 |
T |
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| Q |
322 |
aatgactatagctgttac |
339 |
Q |
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||| |||||||||||||| |
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| T |
9700079 |
aattactatagctgttac |
9700096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 16223296 - 16223247
Alignment:
| Q |
275 |
gaaatgcagaacagatcataggcatcagtgaagaatcccatgccagcaat |
324 |
Q |
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| T |
16223296 |
gaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagcaat |
16223247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 16183906 - 16183860
Alignment:
| Q |
275 |
gaaatgcagaacagatcataggcatcagtgaagaatcccatgccagc |
321 |
Q |
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| T |
16183906 |
gaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagc |
16183860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 33115044 - 33114992
Alignment:
| Q |
275 |
gaaatgcagaacagatcataggcatcagtgaagaatcccatgccagcaatgac |
327 |
Q |
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| T |
33115044 |
gaaatgcagaagagatcataggaatcagtgaaaaaacccattccagcaatgac |
33114992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 16175456 - 16175502
Alignment:
| Q |
275 |
gaaatgcagaacagatcataggcatcagtgaagaatcccatgccagc |
321 |
Q |
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| T |
16175456 |
gaaatgcagaaaagatcataagcatcagtgaagaaacccattccagc |
16175502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 33109006 - 33108957
Alignment:
| Q |
275 |
gaaatgcagaacagatcataggcatcagtgaagaatcccatgccagcaat |
324 |
Q |
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| T |
33109006 |
gaaatgcaaaagagatcataggcatcagtgaaaaaacccattccagcaat |
33108957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 38893103 - 38893055
Alignment:
| Q |
278 |
atgcagaacagatcataggcatcagtgaagaatcccatgccagcaatga |
326 |
Q |
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| T |
38893103 |
atgcagaacagatcataggcatcagtaaagaatcccattccagcaatga |
38893055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 38883908 - 38883863
Alignment:
| Q |
281 |
cagaacagatcataggcatcagtgaagaatcccatgccagcaatga |
326 |
Q |
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| T |
38883908 |
cagaacagatcataggcatctgtaaagaatcccataccagctatga |
38883863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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