View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_high_23 (Length: 323)
Name: NF9183_high_23
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 8175642 - 8175945
Alignment:
| Q |
19 |
gggcctgaaggcaaataataaaagtgaaggttagttttcccaatgctataatagtttatgtttttatgactttatgttattgacttcacaaccaaccatg |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8175642 |
gggcttgaaggcaaataataaaagtgaaggttagttttcccaatgctataatagtttatgtttttatgactttatgttattgacttcacaaccaaccctg |
8175741 |
T |
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| Q |
119 |
tgaagataga-nnnnnnnnccttttatgtttcctgtaaacccaagaaaattgttaaccgtggtagtcaaaatttattgctatc----aacatc-----ac |
208 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| | |
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| T |
8175742 |
tgaagatagattttttttttcttttatgtttcatgtaaacccaagaaaattgttaaccgtggtagtcaaaatttattgccatcacttaaaatcatacgat |
8175841 |
T |
|
| Q |
209 |
ttaatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctact |
308 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||||| |
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| T |
8175842 |
ataatgatgttgatccctatcactgcgttccgtgtttattggaatcctaaattgctaggagacggtggaatctccatgctaggtggtggattccgctact |
8175941 |
T |
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| Q |
309 |
attc |
312 |
Q |
| |
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|||| |
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| T |
8175942 |
attc |
8175945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8148585 - 8148764
Alignment:
| Q |
1 |
cattaatcgtagcttcctgggcctgaaggcaaataataaaagtgaaggttagttttcccaatgctataatagtttatgtttttatgactttatgttattg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8148585 |
cattaatcgtagcttcctgggcttgaaggcaaataataaaagtgaaggttagttttcccaatgctataatagtttatgtttttatgactttatgttattg |
8148684 |
T |
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| Q |
101 |
acttcacaaccaaccatgtgaagataga--nnnnnnnnccttttatgtttcctgtaaacccaagaaaattgttaaccgtg |
178 |
Q |
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||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
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| T |
8148685 |
acttcacaaccaaccctgtgaagatagattttttcttttcttttttgtttcatgtaaacccaagaaaattgttaaccgtg |
8148764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 8153227 - 8153388
Alignment:
| Q |
19 |
gggcctgaaggcaaataataaaagtgaaggttagttttcccaatgctataatagtttatgtttttatgactttatgttattgacttcacaaccaaccatg |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8153227 |
gggcttgaaggcaaataataaaagtgaaggttagttttcccaatgctataatagtttatgtttttatgactttatgttattgacttcacaaccaaccctg |
8153326 |
T |
|
| Q |
119 |
tgaagataga--nnnnnnnnccttttatgtttcctgtaaacccaagaaaattgttaaccgtg |
178 |
Q |
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|||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
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| T |
8153327 |
tgaagatagattttttcttttcttttttgtttcatgtaaacccaagaaaattgttaaccgtg |
8153388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 8149305 - 8149418
Alignment:
| Q |
210 |
taatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctacta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8149305 |
taatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctacta |
8149404 |
T |
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| Q |
310 |
ttccacaggttctg |
323 |
Q |
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||| ||| |||||| |
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| T |
8149405 |
ttctacatgttctg |
8149418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 8153929 - 8154042
Alignment:
| Q |
210 |
taatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctacta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8153929 |
taatgatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctacta |
8154028 |
T |
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| Q |
310 |
ttccacaggttctg |
323 |
Q |
| |
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||| ||| |||||| |
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| T |
8154029 |
ttctacatgttctg |
8154042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 28662122 - 28662205
Alignment:
| Q |
214 |
gatgttgatccctatcactgcgtttcgtgcttattggaatcctaaattgctcggagacgatggaatctccatgctaagtggtgg |
297 |
Q |
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||||||| ||||||| |||| ||| |||| ||||||||||||||||||| | ||||| ||||||| || ||||| ||||||| |
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| T |
28662122 |
gatgttgctccctataactgtgttctgtgccgattggaatcctaaattgctagcagacggtggaatccccgtgctaggtggtgg |
28662205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 7320406 - 7320463
Alignment:
| Q |
255 |
ctaaattgctcggagacgatggaatctccatgctaagtggtggattctgctactattc |
312 |
Q |
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|||||||||| | ||||| |||||||||||||||| |||||||| |||| ||| |||| |
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| T |
7320406 |
ctaaattgctagcagacggtggaatctccatgctaggtggtggaatctgttacgattc |
7320463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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