View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_high_27 (Length: 298)
Name: NF9183_high_27
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 25651154 - 25650924
Alignment:
| Q |
1 |
atgaacataaattttttgagaggagaatgaacataaattgtgatgtnnnnnnnnnnnnnnnnnngtgtacctttggcaattacaaggaataagggtgcaa |
100 |
Q |
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| T |
25651154 |
atgaacatacattttttgagagaagaatgaacataaattgtgatgtaaaatataaaataaaaaagtgtacctttggcaattacaaggaataagggtgcaa |
25651055 |
T |
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| Q |
101 |
ctaaggacttaacattgtaaaaaacatttaattgggaacctctattcaagtagaatatccattcctgcaaaaccagatgaaatgcaatttataagaatat |
200 |
Q |
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| T |
25651054 |
ctaaggacttaacattgtaaaaaacatttaattgggaacctttattcaagtagaatatccattcctgcaaaaccagatgaaatgc-atttataagaatat |
25650956 |
T |
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| Q |
201 |
agaaattaaacctctaaatccaaaattcatatcaaaa |
237 |
Q |
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| T |
25650955 |
a-----taaacctctaaatccaaaattcatataaaaa |
25650924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 25650899 - 25650850
Alignment:
| Q |
235 |
aaatactacaaaagtggaacatgcctcttgagattttgctggtatatttg |
284 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25650899 |
aaatactacaaaagtaaaacatgcctcttgagattttgctggtatatttg |
25650850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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