View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_high_33 (Length: 254)

Name: NF9183_high_33
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_high_33
NF9183_high_33
[»] chr1 (2 HSPs)
chr1 (12-236)||(46594827-46595051)
chr1 (48-162)||(32774127-32774241)
[»] chr8 (5 HSPs)
chr8 (19-211)||(37269813-37270006)
chr8 (65-222)||(42941151-42941308)
chr8 (18-164)||(36404034-36404180)
chr8 (72-124)||(8273845-8273897)
chr8 (46-162)||(9936367-9936483)
[»] scaffold0760 (1 HSPs)
scaffold0760 (48-201)||(1722-1875)
[»] chr6 (5 HSPs)
chr6 (28-222)||(1034210-1034405)
chr6 (68-170)||(10232725-10232827)
chr6 (25-141)||(2920913-2921029)
chr6 (25-158)||(18246523-18246656)
chr6 (48-126)||(32548918-32548995)
[»] scaffold0495 (1 HSPs)
scaffold0495 (68-170)||(9448-9550)
[»] chr3 (3 HSPs)
chr3 (24-126)||(53553627-53553728)
chr3 (25-158)||(1259270-1259403)
chr3 (25-158)||(37242558-37242691)
[»] chr4 (3 HSPs)
chr4 (25-158)||(16989581-16989714)
chr4 (46-162)||(2282214-2282330)
chr4 (85-222)||(4913390-4913527)
[»] chr2 (3 HSPs)
chr2 (41-118)||(33858647-33858724)
chr2 (72-125)||(1479469-1479522)
chr2 (80-212)||(11272451-11272583)
[»] chr7 (3 HSPs)
chr7 (74-158)||(31234771-31234855)
chr7 (46-162)||(42460099-42460215)
chr7 (119-180)||(21245264-21245325)
[»] chr5 (1 HSPs)
chr5 (72-222)||(36988940-36989090)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 46594827 - 46595051
Alignment:
Q  12 cagagaccctacagcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  46594827 cagagaccctacagcagatccaaaaagaaagccactttcatctcctatttaaacattctttaggatttcaagtccactcgtaaaagagaaaggaagctat 46594926  T
Q  112 cttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgcttgatcattaataatcctcgcatttctt 211  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  46594927 gttaagtctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgcttgatcattaaaaattctcgcatttctt 46595026  T
Q  212 ttcttctaaattgagaatttcattt 236  Q
    ||||| |||||||||||||||||||    
T  46595027 ttcttttaaattgagaatttcattt 46595051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 32774127 - 32774241
Alignment:
Q  48 ttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccac 147  Q
    ||||||| |||||||  || ||| ||||||| ||||||||||||||||||||||| || |||||||| |||||||||||   ||||| |||||| ||| |    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T
Q  148 tttaatttcatccac 162  Q
    ||| || ||||||||    
T  32774227 tttgatctcatccac 32774241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 37269813 - 37270006
Alignment:
Q  19 cctacagcagatccaaaaa-gaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaa 117  Q
    |||| |||||||||||||| || ||||   ||||||| ||||| |  |||||| ||||||| |||||||||||||||||||||||||||||||||||||     
T  37269813 cctatagcagatccaaaaaagacagccggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaag 37269912  T
Q  118 tctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgcttgatcattaataatcctcgcatttctt 211  Q
    ||||||||| |||||||||||||| |  ||||| ||||| |||||||||||||  |||||||| |||||||  |||| ||||||||||||||||    
T  37269913 tctactcaacacccaaaaccaagatataactttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcctcgcatttctt 37270006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 42941308 - 42941151
Alignment:
Q  65 cattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaa 164  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||| |  ||||| ||||| |||||||    
T  42941308 cattctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacaccccaaaccaagataaaactttgatttcctccacaa 42941209  T
Q  165 tctcataaacatcctttgcttgatcattaataatcctcgcatttcttttcttctaaat 222  Q
    ||||||  |||||||| |||||||  |||| ||||||||||||| ||| |||| ||||    
T  42941208 tctcatccacatccttcgcttgattcttaaaaatcctcgcatttttttccttccaaat 42941151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 36404034 - 36404180
Alignment:
Q  18 ccctacagcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaa 117  Q
    ||||| |||||| | ||||| | || ||| ||||||| |||||||| |||||| ||||||| ||||||||||| || ||||||||||||||||||||||     
T  36404034 ccctatagcagagctaaaaaaacagtcaccttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagctatcttaag 36404133  T
Q  118 tctactcaatacccaaaaccaagacaccactttaatttcatccacaa 164  Q
    |||||||||  ||||||||||||| |||||||| ||||||| |||||    
T  36404134 tctactcaacgcccaaaaccaagataccactttgatttcattcacaa 36404180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 8273897 - 8273845
Alignment:
Q  72 taggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 124  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||    
T  8273897 taggattccaaatccactcataaaagaggaaagaagctatctttaatctactc 8273845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 9936483 - 9936367
Alignment:
Q  46 ctttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacacc 145  Q
    ||||||||| |||||||  || | | |||| || ||||||||||||||||||||||| || |||||||| | ||| ||||| | ||| | ||||||||||    
T  9936483 ctttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgctcaacatccacacccaagacacc 9936384  T
Q  146 actttaatttcatccac 162  Q
     ||| ||| ||||||||    
T  9936383 gcttcaatctcatccac 9936367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 1722 - 1875
Alignment:
Q  48 ttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccac 147  Q
    ||||||| ||||| |  |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |  ||    
T  1722 ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataac 1821  T
Q  148 tttaatttcatccacaatctcataaacatcctttgcttgatcattaataatcct 201  Q
    ||| ||||| |||||||||||||  |||||||| |||||||  |||| ||||||    
T  1822 tttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcct 1875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 1034405 - 1034210
Alignment:
Q  28 gatccaaaaagaaagccactttcatctcc-tatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaa 126  Q
    |||||||||||| |||  ||||||||||| ||||||  || ||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||    
T  1034405 gatccaaaaagacagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaa 1034306  T
Q  127 tacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgcttgatcattaataatcctcgcatttcttttcttctaaat 222  Q
       ||||| |||||| ||| ||||||| |||||||| ||||||  ||| ||||| ||||  | ||||| |||||| |||||||||| |||| ||||    
T  1034305 cgtccaaacccaagaaaccgctttaatctcatccactatctcaccaacctccttcgctttgttattaaaaatccttgcatttctttccttccaaat 1034210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 10232827 - 10232725
Alignment:
Q  68 tctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatct 167  Q
    |||||| |||| ||| ||||||||||||||||||| ||||||||||| | |||||||||  | |||||| ||| |||||||||||||||||||||||| |    
T  10232827 tctttaagattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaaagctcaaaactaagtcaccactttaatttcatccacaattt 10232728  T
Q  168 cat 170  Q
    |||    
T  10232727 cat 10232725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 2920913 - 2921029
Alignment:
Q  25 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 124  Q
    |||||| ||||||||||||||| ||||||| || ||||  ||||||   ||||| || |||||||||||||||||||| ||||||||||| || ||||||    
T  2920913 gcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatctttaacctactc 2921012  T
Q  125 aatacccaaaaccaaga 141  Q
    || | ||||| ||||||    
T  2921013 aacatccaaacccaaga 2921029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 18246523 - 18246656
Alignment:
Q  25 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 124  Q
    |||||| |||||||| |||| | ||||||| || ||||  ||||||   ||||| || ||||||||||| |||||||| ||||||||||| || ||||||    
T  18246523 gcagattcaaaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactc 18246622  T
Q  125 aatacccaaaaccaagacaccactttaatttcat 158  Q
    || | ||||| |||||| | | ||||||||||||    
T  18246623 aacatccaaacccaagaaagcgctttaatttcat 18246656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 32548995 - 32548918
Alignment:
Q  48 ttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaa 126  Q
    ||||||| |||||||  |||| | |||||||  ||||||||| ||||||||| ||| |||||||||||| |||||||||    
T  32548995 ttcatcttctatttagacattatctaggattctaagtccacttataaaagagaaag-aagctatcttaagtctactcaa 32548918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 9550 - 9448
Alignment:
Q  68 tctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatct 167  Q
    |||||| |||| ||| ||||||||||||||||||| ||||||||||| | |||||||||  | |||||| ||| |||||||||||||||||||||||| |    
T  9550 tctttaagattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaaagctcaaaactaagtcaccactttaatttcatccacaattt 9451  T
Q  168 cat 170  Q
    |||    
T  9450 cat 9448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 53553627 - 53553728
Alignment:
Q  24 agcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctact 123  Q
    |||||||||||||| | |||  |||||||||||||||||  || ||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  53553627 agcagatccaaaaa-acagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctact 53553725  T
Q  124 caa 126  Q
    |||    
T  53553726 caa 53553728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 1259270 - 1259403
Alignment:
Q  25 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 124  Q
    |||||| |||||||| ||||   ||||||| || ||||  ||||||   ||||| || ||||||||||| |||||||| ||||||||||| || ||||||    
T  1259270 gcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactc 1259369  T
Q  125 aatacccaaaaccaagacaccactttaatttcat 158  Q
    || | ||||| |||||| | | ||||||||||||    
T  1259370 aacatccaaacccaagaaagcgctttaatttcat 1259403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 37242558 - 37242691
Alignment:
Q  25 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 124  Q
    |||||| |||||||| ||||   ||||||| || ||||  ||||||   ||||| || ||||||||||| |||||||| ||||||||||| || ||||||    
T  37242558 gcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactc 37242657  T
Q  125 aatacccaaaaccaagacaccactttaatttcat 158  Q
    || | ||||| |||||| | | ||||||||||||    
T  37242658 aacatccaaacccaagaaagcgctttaatttcat 37242691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 16989714 - 16989581
Alignment:
Q  25 gcagatccaaaaagaaagccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactc 124  Q
    |||||| |||||||| |||| | ||||||| || ||||  ||||||   ||||| || ||||||||||| |||||||| ||||||||||| || ||||||    
T  16989714 gcagattcaaaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaagctatcttcaacctactc 16989615  T
Q  125 aatacccaaaaccaagacaccactttaatttcat 158  Q
    || | ||||| |||||| | | ||||||||||||    
T  16989614 aacatccaaacccaagaaagcgctttaatttcat 16989581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 2282330 - 2282214
Alignment:
Q  46 ctttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacacc 145  Q
    ||||||||| |||||||  |||||  |||| ||  ||||||| ||||| |||||||| || ||| |||| ||||||||||||  ||| | |||||| |||    
T  2282330 ctttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaacgatgctttctttaatctactcaatgaccacacccaagaaacc 2282231  T
Q  146 actttaatttcatccac 162  Q
     ||||||| ||||||||    
T  2282230 gctttaatctcatccac 2282214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 4913390 - 4913527
Alignment:
Q  85 ccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctttgct 184  Q
    |||||| ||||||||  | ||||||||| | |||||||||||   |||| ||||||||||||||||||| | ||| || | ||||| || || ||    |    
T  4913390 ccactcgtaaaagagacaagaagctatcctcaatctactcaaagaccaacaccaagacaccactttaatgttatcaaccacctcatcaaaatgctgaaat 4913489  T
Q  185 tgatcattaataatcctcgcatttcttttcttctaaat 222  Q
    ||||  |||| ||||||||||||||||| |||| ||||    
T  4913490 tgattcttaaaaatcctcgcatttctttccttccaaat 4913527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 33858647 - 33858724
Alignment:
Q  41 agccactttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaat 118  Q
    |||||| ||||||| |||||||  ||||||  |||||| |||||||||||||| ||||||||||||||| ||||||||    
T  33858647 agccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagctttcttaaat 33858724  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 1479469 - 1479522
Alignment:
Q  72 taggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactca 125  Q
    ||||||| ||||||||||||||||||||||| || |||||||| ||||||||||    
T  1479469 taggattccaagtccactcataaaagaggaacgatgctatctttaatctactca 1479522  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 11272583 - 11272451
Alignment:
Q  80 caagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcct 179  Q
    ||||| |||||||| |||||||| ||||||||||| || ||||||||   ||||| |||||| ||| |||| ||||||| |||||| || |  || ||||    
T  11272583 caagttcactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaaccgctttgatttcattcacaatttcctccacttcct 11272484  T
Q  180 ttgcttgatcattaataatcctcgcatttcttt 212  Q
    ||  ||||| ||| | |||||| ||||||||||    
T  11272483 ttctttgattattgaaaatccttgcatttcttt 11272451  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 31234771 - 31234855
Alignment:
Q  74 ggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcat 158  Q
    ||||| |||||||||||||| |||||||| ||||||||||| || |||||||| | ||||| |||||| | | ||||||||||||    
T  31234771 ggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcat 31234855  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 42460099 - 42460215
Alignment:
Q  46 ctttcatctcctatttaaccattctttaggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacacc 145  Q
    ||||||||| |||||||  || ||| ||||||| |||||| |||||||||||||||| || |||||||| |  || |||| || ||| | ||||||||||    
T  42460099 ctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatccacacccaagacacc 42460198  T
Q  146 actttaatttcatccac 162  Q
     ||||||| ||||||||    
T  42460199 gctttaatctcatccac 42460215  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 21245264 - 21245325
Alignment:
Q  119 ctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcataaacatcctt 180  Q
    |||||||| |||||||||||||||| |||||| ||||| || | |||||||| ||| |||||    
T  21245264 ctactcaaaacccaaaaccaagacaacacttttatttcgtcgataatctcatcaacctcctt 21245325  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 36989090 - 36988940
Alignment:
Q  72 taggatttcaagtccactcataaaagaggaaggaagctatcttaaatctactcaatacccaaaaccaagacaccactttaatttcatccacaatctcata 171  Q
    ||||||| || ||||||| ||| |||||||| ||||||||||| || |||||||| | ||||| |||||| ||| |||| ||||| | ||| || || |     
T  36989090 taggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgctttgatttcgttcactatttcctc 36988991  T
Q  172 aacatcctttgcttgatcattaataatcctcgcatttcttttcttctaaat 222  Q
     |||| |||   | ||| ||||| ||||||||||||||||| |||| ||||    
T  36988990 cacattcttccttagattattaaaaatcctcgcatttctttccttccaaat 36988940  T

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