View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_high_37 (Length: 203)
Name: NF9183_high_37
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 13854986 - 13855160
Alignment:
| Q |
18 |
aatgtcacaaacagagccaattcgtttcggcattctcggttgcgcggacatagcccgcaaactctcacgcaccattctcctctcttccaccgccacaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13854986 |
aatgtcacaaacagagccaattcgtttcggcattctcggttgcgcggacatagcccgcaaactctcacgcaccattctcctctcttccaccgccacaatc |
13855085 |
T |
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| Q |
118 |
tccgccgtcggcagccgcactctctccaaagcaaccaccttcgcaaaactcaacaacttccctcccaccaccaaa |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
13855086 |
tccgccgtcggcagccgcactctctccaaagcaaccaccttcgcaaaactcaacaacttccgtcccaccgccaaa |
13855160 |
T |
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Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 13849196 - 13849370
Alignment:
| Q |
18 |
aatgtcacaaacagagccaattcgtttcggcattctcggttgcgcggacatagcccgcaaactctcacgcaccattctcctctcttccaccgccacaatc |
117 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
13849196 |
aatgtcacaaactgaaccaatccgtttcggcattctcggttgcgccgacatagcccgcaaactctcacgcgccattctcctctcttccaccgccaccatc |
13849295 |
T |
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| Q |
118 |
tccgccgtcggcagccgcactctctccaaagcaaccaccttcgcaaaactcaacaacttccctcccaccaccaaa |
192 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13849296 |
tctgccgtcggcagccgcactctctccaaagcaaccaccttcgcaaaactcaacaacttccctcccaccgccaaa |
13849370 |
T |
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