View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_high_5 (Length: 541)

Name: NF9183_high_5
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_high_5
NF9183_high_5
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-527)||(82649-83190)
[»] chr7 (13 HSPs)
chr7 (1-527)||(40883094-40883635)
chr7 (90-174)||(30781191-30781275)
chr7 (125-174)||(25174328-25174377)
chr7 (90-174)||(4248811-4248895)
chr7 (184-300)||(8461743-8461859)
chr7 (137-174)||(29663095-29663132)
chr7 (184-299)||(25174192-25174307)
chr7 (124-174)||(9021605-9021655)
chr7 (123-165)||(14629577-14629619)
chr7 (192-298)||(29502138-29502244)
chr7 (123-172)||(8727905-8727954)
chr7 (137-174)||(23469223-23469260)
chr7 (213-277)||(40055771-40055835)
[»] chr2 (5 HSPs)
chr2 (105-174)||(29141839-29141908)
chr2 (107-174)||(31643521-31643588)
chr2 (121-172)||(30909360-30909411)
chr2 (124-173)||(27640783-27640832)
chr2 (120-164)||(18486100-18486144)
[»] chr4 (10 HSPs)
chr4 (77-173)||(15632315-15632411)
chr4 (105-174)||(2763035-2763104)
chr4 (107-174)||(7776950-7777017)
chr4 (109-174)||(9046008-9046073)
chr4 (232-301)||(45670003-45670072)
chr4 (123-174)||(13869323-13869374)
chr4 (184-277)||(13233410-13233503)
chr4 (107-174)||(18707862-18707928)
chr4 (141-174)||(54795787-54795820)
chr4 (138-174)||(13857793-13857829)
[»] chr8 (11 HSPs)
chr8 (107-174)||(8996528-8996594)
chr8 (213-299)||(7422076-7422162)
chr8 (107-174)||(43073214-43073281)
chr8 (231-291)||(25383084-25383143)
chr8 (122-174)||(36257643-36257695)
chr8 (107-174)||(8995152-8995219)
chr8 (136-174)||(4698101-4698139)
chr8 (184-277)||(5590059-5590152)
chr8 (137-174)||(7413326-7413363)
chr8 (137-174)||(7421883-7421920)
chr8 (90-174)||(25382932-25383016)
[»] chr5 (11 HSPs)
chr5 (70-169)||(5930014-5930113)
chr5 (107-169)||(20117662-20117724)
chr5 (122-172)||(38705484-38705534)
chr5 (185-294)||(8074237-8074346)
chr5 (120-165)||(17701356-17701401)
chr5 (99-174)||(19577082-19577157)
chr5 (213-299)||(2616018-2616104)
chr5 (255-301)||(43348677-43348723)
chr5 (105-174)||(20071064-20071133)
chr5 (126-174)||(2616147-2616195)
chr5 (137-165)||(25397168-25397196)
[»] chr6 (8 HSPs)
chr6 (107-168)||(13204074-13204135)
chr6 (105-173)||(13405271-13405339)
chr6 (121-174)||(2399229-2399282)
chr6 (105-174)||(7524039-7524108)
chr6 (107-174)||(7536638-7536705)
chr6 (141-174)||(34127678-34127711)
chr6 (232-300)||(7021862-7021930)
chr6 (213-277)||(26468629-26468693)
[»] chr3 (9 HSPs)
chr3 (224-301)||(7160329-7160406)
chr3 (122-174)||(25894680-25894732)
chr3 (108-174)||(2619065-2619131)
chr3 (127-173)||(7441620-7441666)
chr3 (136-174)||(21259147-21259185)
chr3 (121-174)||(25807139-25807192)
chr3 (141-174)||(25911666-25911699)
chr3 (141-174)||(27742666-27742699)
chr3 (133-174)||(49657035-49657076)
[»] chr1 (9 HSPs)
chr1 (121-173)||(18113671-18113723)
chr1 (107-174)||(9246810-9246877)
chr1 (224-291)||(32540631-32540698)
chr1 (121-168)||(42225489-42225536)
chr1 (136-174)||(44317747-44317785)
chr1 (136-174)||(48708242-48708280)
chr1 (141-174)||(45807079-45807112)
chr1 (90-174)||(21852182-21852266)
chr1 (137-173)||(45807197-45807233)
[»] scaffold0028 (1 HSPs)
scaffold0028 (122-174)||(33704-33756)
[»] scaffold0003 (1 HSPs)
scaffold0003 (105-174)||(303669-303738)


Alignment Details
Target: scaffold0041 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 82649 - 83190
Alignment:
Q  1 aagtggttgtagctagtagcggagtaagnnnnnnngtttgggtgagccactaaaatataagccttcgctatcaactaagtataaacacgacaaaatttat 100  Q
    ||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  82649 aagtggttgtagctagtagcggagtaagaaaaaaaggttgggtgagccactaaaatataagccttcgctatcaattaagtataaacacgacaaaaattat 82748  T
Q  101 gtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctatannnnnnnnc----------cgggtgg 190  Q
    ||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||                   |||||||    
T  82749 gtatgccacttttgaaatcaccgaaaactaaaatcgttgaaaaattgtttaaagtctcgcaaaatagacctatatttttttttaattttttttcgggtgg 82848  T
Q  191 accactacgcccctttagggggatttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatcttt 290  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| ||||||||||||||||||||    
T  82849 accactacgccactttggggagatttggatctgccgaaaactaaaaccgacacaaaagtgtataaaatctcgcataatagacctatagtcgttaatcttt 82948  T
Q  291 taaattttccgaaccctagcccaagaagagctctacctctagttgtagccttgtggatgttggctgtgattgtaaggtcgactgtttgaaacctattttc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  82949 taaattttccgaaccctagcccaagaagagctctacctctagttgtagccttgtggatgttggctgtgattgtaaggtcgactgtttgaatcctattttc 83048  T
Q  391 attcaagcaagtgcgacttacaactactgta-----attgtatcttgtcttttcaagaatcataatatgcagaagcgtatatgaattcatgattacaaaa 485  Q
    |||||||||||||||||||||||||| ||||     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  83049 attcaagcaagtgcgacttacaactattgtaattatattgtatcttgtcttttcaagaatcataatatgcagaagcatatatgaattcatgattagaaaa 83148  T
Q  486 gtgtataaaatctcgcacactctaggagaactcttttgatgt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  83149 gtgtataaaatctcgcacactctaggagaactcttttgatgt 83190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 40883635 - 40883094
Alignment:
Q  1 aagtggttgtagctagtagcggagtaagnnnnnnngtttgggtgagccactaaaatataagccttcgctatcaactaagtataaacacgacaaaatttat 100  Q
    ||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  40883635 aagtggttgtagctagtagcggagtaagaaaaaaaggttgggtgagccactaaaatataagccttcgctatcaattaagtataaacacgacaaaaattat 40883536  T
Q  101 gtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctatannnnnnnnc----------cgggtgg 190  Q
    ||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||                   |||||||    
T  40883535 gtatgccacttttgaaatcaccgaaaactaaaatcgttgaaaaattgtttaaagtctcgcaaaatagacctatatttttttttaattttttttcgggtgg 40883436  T
Q  191 accactacgcccctttagggggatttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatcttt 290  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| ||||||||||||||||||||    
T  40883435 accactacgccactttggggagatttggatctgccgaaaactaaaaccgacacaaaagtgtataaaatctcgcataatagacctatagtcgttaatcttt 40883336  T
Q  291 taaattttccgaaccctagcccaagaagagctctacctctagttgtagccttgtggatgttggctgtgattgtaaggtcgactgtttgaaacctattttc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40883335 taaattttccgaaccctagcccaagaagagctctacctctagttgtagccttgtggatgttggctgtgattgtaaggtcgactgtttgaatcctattttc 40883236  T
Q  391 attcaagcaagtgcgacttacaactactgta-----attgtatcttgtcttttcaagaatcataatatgcagaagcgtatatgaattcatgattacaaaa 485  Q
    |||||||||||||||||||||||||| ||||     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  40883235 attcaagcaagtgcgacttacaactattgtaattatattgtatcttgtcttttcaagaatcataatatgcagaagcatatatgaattcatgattagaaaa 40883136  T
Q  486 gtgtataaaatctcgcacactctaggagaactcttttgatgt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40883135 gtgtataaaatctcgcacactctaggagaactcttttgatgt 40883094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 30781275 - 30781191
Alignment:
Q  90 acaaaatttatgtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||| | ||||| | ||||||||||||||| |||||||| || | |||||||||||||||||  || ||||||||||||||||    
T  30781275 acaaaaatcatgtatgccacttttgaaatcacggaaaactataaccgttgaaaaattgtttaaagactcgcaaaatagacctata 30781191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 25174377 - 25174328
Alignment:
Q  125 aaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  25174377 aaactaaaatcgttgaaaaattgtttaaagtctcgcaaaatagacctata 25174328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 4248811 - 4248895
Alignment:
Q  90 acaaaatttatgtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||| | ||||| | ||||||||||| | ||||||||||||| | ||| |  |||||||||| ||||||||||||||||||||    
T  4248811 acaaaaatcatgtatgccacttttgaaaccgccgaaaactaaaaccgttggaggattgtttaaagtcttgcaaaatagacctata 4248895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 8461859 - 8461743
Alignment:
Q  184 cgggtggaccactacgcccctttagggggatttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgtt 283  Q
    ||||||||||||||| ||  |||  ||| |||||||||  |||||| ||||||| |||| |||| | ||| |||| ||||| |||| ||||||| |||||    
T  8461859 cgggtggaccactacaccaatttgcgggaatttggatcaaccgaaacctaaaacagacataaaattgtataaaatatcgcaaaatagacctataatcgtt 8461760  T
Q  284 aatcttttaaattttcc 300  Q
    ||| |||||| ||||||    
T  8461759 aattttttaatttttcc 8461743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 29663132 - 29663095
Alignment:
Q  137 ttgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29663132 ttgaaaaattgtttaaagtcttgcaaaatagacctata 29663095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 25174307 - 25174192
Alignment:
Q  184 cgggtggaccactacgcccctttagggggatttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgtt 283  Q
    ||||||||||||||| || ||||  | | |||||||||  |||||| |||||||  ||||| || ||||| |||||||||| |||  |||||  ||||||    
T  25174307 cgggtggaccactacaccactttgtgagaatttggatcaaccgaaacctaaaaccaacacataattatataaaatctcgcaaaattgacctacggtcgtt 25174208  T
Q  284 aatcttttaaattttc 299  Q
    ||| |||||| |||||    
T  25174207 aattttttaatttttc 25174192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 9021655 - 9021605
Alignment:
Q  124 aaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||| || ||||||||||||||||||| ||| |||||||||| |||||    
T  9021655 aaaactataaccattgaaaaattgtttaaagtctcgcaaaatagaactata 9021605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 14629577 - 14629619
Alignment:
Q  123 gaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaat 165  Q
    ||||||||||| | ||||||||||||| |||||||||||||||    
T  14629577 gaaaactaaaaccgttgaaaaattgttgaaaatcttgcaaaat 14629619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 29502138 - 29502244
Alignment:
Q  192 ccactacgcccctttagggggatttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatctttt 291  Q
    ||||||| || ||||  ||| ||||||||||| ||||| |||||||  |||||||| |  || |||||| ||| |||| ||||||  |||||||| ||||    
T  29502138 ccactacaccactttgcgggaatttggatctgtcgaaacctaaaaccaacacaaaattgaataaaatcttgcaaaatatacctattatcgttaatttttt 29502237  T
Q  292 aaatttt 298  Q
    |||||||    
T  29502238 aaatttt 29502244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 8727954 - 8727905
Alignment:
Q  123 gaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagaccta 172  Q
    ||||||||||| ||||||||||||||||||| | | | ||||||||||||    
T  8727954 gaaaactaaaaccattgaaaaattgtttaaagtttcgtaaaatagaccta 8727905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 23469223 - 23469260
Alignment:
Q  137 ttgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  23469223 ttgaaaaattgtttaaaatctcgcaaattagacctata 23469260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 40055835 - 40055771
Alignment:
Q  213 atttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctata 277  Q
    |||||||||  |||||| |||||||||||| |||| | ||| |||||||||| |||| |||||||    
T  40055835 atttggatcaaccgaaacctaaaactgacataaaattgtataaaatctcgcaaaatagacctata 40055771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 29141839 - 29141908
Alignment:
Q  105 gtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||| | ||||||| ||||||  ||||||||||||||||| ||| ||||||||||||||||    
T  29141839 gtcacttttgaaaccgccgaaaattaaaattgttgaaaaattgtttaaagtctcgcaaaatagacctata 29141908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 31643521 - 31643588
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||| | | |||||||| || | ||||||||||||||||| ||| ||||||||||||||||    
T  31643521 cacttttgaaagcgcggaaaactataacctttgaaaaattgtttaaagtctcgcaaaatagacctata 31643588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 30909360 - 30909411
Alignment:
Q  121 ccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagaccta 172  Q
    ||||| ||||||||| | | ||||||||||||||||||||||| ||||||||    
T  30909360 ccgaacactaaaatcgtcgcaaaattgtttaaaatcttgcaaagtagaccta 30909411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 27640832 - 27640783
Alignment:
Q  124 aaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctat 173  Q
    |||||| ||| |||||||||||||||||||| || | |||||||||||||    
T  27640832 aaaactcaaaccattgaaaaattgtttaaaaactcgtaaaatagacctat 27640783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 18486100 - 18486144
Alignment:
Q  120 accgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaa 164  Q
    ||||| |||||||| ||||||||| ||||||||||||| ||||||    
T  18486100 accgataactaaaaccattgaaaatttgtttaaaatctcgcaaaa 18486144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 15632411 - 15632315
Alignment:
Q  77 aagtataaacacgacaaaatttatgtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctat 173  Q
    |||||||| || ||||||| |  |||| ||||||||||||| | |||||||||| || |||||||||||||||||| | || | |||||||||||||    
T  15632411 aagtataagcatgacaaaaatcttgtaggtcacttttgaaaccgccgaaaactataaccattgaaaaattgtttaacacctcgtaaaatagacctat 15632315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 2763104 - 2763035
Alignment:
Q  105 gtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||| |  |||||||||||||| |||||||||||| ||||||||  |||||||||| ||||    
T  2763104 gtcacttttgaaaccgtcgaaaactaaaatcgttgaaaaattgtataaaatctctcaaaatagacatata 2763035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 7777017 - 7776950
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||| | | | |||||| |||| ||||||||||||||||| ||| ||||||||||||||||    
T  7777017 cacttttgaaaccgcgggaaactataatcgttgaaaaattgtttaaagtctcgcaaaatagacctata 7776950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 9046008 - 9046073
Alignment:
Q  109 cttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||| | |||||||||||||||||||||||||| |||||| |||   ||||||||| ||||    
T  9046008 cttttgaaaccgccgaaaactaaaatcattgaaaaattatttaaagtctcataaaatagacatata 9046073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 45670072 - 45670003
Alignment:
Q  232 taaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatcttttaaattttccg 301  Q
    |||||| ||||||||| || || |||||||||| |||||||||||| ||||| || |||||| |||||||    
T  45670072 taaaaccgacacaaaattacataaaatctcgcaaaataaacctataatcgttgattttttaatttttccg 45670003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 13869374 - 13869323
Alignment:
Q  123 gaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||| || | |||||||| |||||||||||| ||||||||||||||||    
T  13869374 gaaaactataaccgttgaaaaaatgtttaaaatctcgcaaaatagacctata 13869323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 13233503 - 13233410
Alignment:
Q  184 cgggtggaccactacgcccctttagggggatttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctata 277  Q
    ||||||||||||||| ||  |||  ||| |||||||||  |||||| ||||||| |||| |||| | ||| |||||||||| |||| |||||||    
T  13233503 cgggtggaccactacaccgatttgcgggaatttggatcaaccgaaacctaaaaccgacataaaattgtataaaatctcgcaaaatagacctata 13233410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 18707928 - 18707862
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaa-atcttgcaaaatagacctata 174  Q
    |||||||||||||||  ||||||| || | ||||||||||||||||| |||  ||||||||||||||||    
T  18707928 cacttttgaaatcacataaaactataagcgttgaaaaattgtttaaagatc--gcaaaatagacctata 18707862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 54795787 - 54795820
Alignment:
Q  141 aaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||| |||||||||||||||||||||||||    
T  54795787 aaaattgtataaaatcttgcaaaatagacctata 54795820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 13857829 - 13857793
Alignment:
Q  138 tgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  13857829 tgaaaaaatgtttaaaatctcgcaaaatagacctata 13857793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 8996594 - 8996528
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||| | || |||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  8996594 cacttttgaaaccgccaaaaactaaaa-cactgaaaaattgtttaaaatctcgcaaaatagacctata 8996528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 7422076 - 7422162
Alignment:
Q  213 atttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatcttttaaattttc 299  Q
    |||||||||  |||||| ||||||| ||||||||| | ||| |||||||||| |||||||||||| ||||| || |||||| |||||    
T  7422076 atttggatcaaccgaaatctaaaaccgacacaaaattgtataaaatctcgcaaaataaacctataatcgttgattttttaatttttc 7422162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 43073281 - 43073214
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||  |||||||||||||    |||||||||||||||| | ||||||||||||||||||    
T  43073281 cacttttgaaattgccgaaaactaaaaatgctgaaaaattgtttaaagttttgcaaaatagacctata 43073214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 25383084 - 25383143
Alignment:
Q  231 ctaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatctttt 291  Q
    ||||||| ||||||||| ||||| |||||||||| |||| |||||||||||||||| ||||    
T  25383084 ctaaaaccgacacaaaa-tatataaaatctcgcaaaatagacctatagtcgttaatttttt 25383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 36257643 - 36257695
Alignment:
Q  122 cgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||||||||  |||||||||||||||||| || ||||||| ||||||||    
T  36257643 cgaaaactaaaattgttgaaaaattgtttaaaaactcgcaaaatggacctata 36257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 8995219 - 8995152
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||| | |||||||||||   ||||||||||| | ||| ||| ||||||||||||||||    
T  8995219 cacttttgaaatcgctgaaaactaaaacagttgaaaaattgctcaaagtctcgcaaaatagacctata 8995152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 4698139 - 4698101
Alignment:
Q  136 attgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  4698139 attgaaaaattgtttaaagtcttgcaaattagacctata 4698101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 5590059 - 5590152
Alignment:
Q  184 cgggtggaccactacgcccctttagggggatttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctata 277  Q
    ||||||||||||||| ||  |||  ||| |||||||||  |||||| ||||||| |||| |||| | ||| |||||||||| |||| |||||||    
T  5590059 cgggtggaccactacaccaatttgcgggaatttggatcaaccgaaacctaaaaccgacataaaattgtataaaatctcgcaaaatagacctata 5590152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 7413363 - 7413326
Alignment:
Q  137 ttgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  7413363 ttgaaaaattgtttaaagtctcgcaaaatagacctata 7413326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 7421883 - 7421920
Alignment:
Q  137 ttgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  7421883 ttgaaaaattgtttaaagtcttgcaaaatagacatata 7421920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 25382932 - 25383016
Alignment:
Q  90 acaaaatttatgtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||| | ||||| ||||||||||||| | |  ||||||| || | ||||||||||||| ||| ||| ||||||||| ||||||    
T  25382932 acaaaaatcatgtatgtcacttttgaaaccgcgaaaaactataaccgttgaaaaattgttcaaagtctcgcaaaataggcctata 25383016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 5930113 - 5930014
Alignment:
Q  70 atcaactaagtataaacacgacaaaatttatgtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagac 169  Q
    |||| |||||||||| || ||||||| | | ||| |||||||||||||   | ||||||||||||| |||  |||||||||||||||| |||||||||||    
T  5930113 atcagctaagtataagcatgacaaaaatcacgtatgtcacttttgaaactgctgaaaactaaaatctttggcaaattgtttaaaatctcgcaaaatagac 5930014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 20117724 - 20117662
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagac 169  Q
    ||||||||||| | ||||||||||||||| ||||||| ||||||||| ||| |||||||||||    
T  20117724 cacttttgaaaccgccgaaaactaaaatcgttgaaaagttgtttaaagtctcgcaaaatagac 20117662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 38705484 - 38705534
Alignment:
Q  122 cgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagaccta 172  Q
    |||||| ||||| | ||||||||||||||||||||||||||||| ||||||    
T  38705484 cgaaaattaaaaacgttgaaaaattgtttaaaatcttgcaaaatggaccta 38705534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 8074237 - 8074346
Alignment:
Q  185 gggtggaccactacgcccctttagggggatttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgtta 284  Q
    |||||||||||||| |  ||||  ||| |||||||||  || ||| ||||||| ||||||||| | ||| |||||||||| |||| ||||||| |||||     
T  8074237 gggtggaccactacactactttgcgggaatttggatcaaccaaaacctaaaaccgacacaaaattgtataaaatctcgcaaaatagacctataatcgttg 8074336  T
Q  285 atcttttaaa 294  Q
    || |||||||    
T  8074337 attttttaaa 8074346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 17701401 - 17701356
Alignment:
Q  120 accgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaat 165  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||    
T  17701401 accgaaaattaaaaccattgaaaaattgttgaaaatcttgcaaaat 17701356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 19577082 - 19577157
Alignment:
Q  99 atgtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||| ||||||||| ||||| | |||||||| || | ||||||||||||||||  ||| |||||| |||||||||    
T  19577082 atgtatgtcacttttaaaatctcggaaaactataaccgttgaaaaattgtttaatgtctcgcaaaacagacctata 19577157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 2616104 - 2616018
Alignment:
Q  213 atttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatcttttaaattttc 299  Q
    |||||||| || ||||||||||||| |||| ||||| || | || |||||||| ||| | ||||||| |||||| |||||| |||||    
T  2616104 atttggatttgtcgaaaactaaaaccgacaaaaaaaaatttaaactctcgcatcatagagctatagttgttaattttttaatttttc 2616018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 43348723 - 43348677
Alignment:
Q  255 aaatctcgcataataaacctatagtcgttaatcttttaaattttccg 301  Q
    |||||||||| |||||||||||| |||||||| |||||| |||||||    
T  43348723 aaatctcgcaaaataaacctataatcgttaattttttaatttttccg 43348677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 20071064 - 20071133
Alignment:
Q  105 gtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||| |  |||||| ||||| | ||||||||||||||||| ||| | |||||| |||||||    
T  20071064 gtcacttttgaaaccgtcgaaaattaaaaccgttgaaaaattgtttaaagtctcgtaaaataaacctata 20071133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 2616195 - 2616147
Alignment:
Q  126 aactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||| ||||||||| ||||||||||||  ||||||||||| ||||    
T  2616195 aactaaaaccattgaaaagttgtttaaaatcaagcaaaatagacttata 2616147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 25397168 - 25397196
Alignment:
Q  137 ttgaaaaattgtttaaaatcttgcaaaat 165  Q
    |||||||||||||||||||||||||||||    
T  25397168 ttgaaaaattgtttaaaatcttgcaaaat 25397196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 13204135 - 13204074
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaataga 168  Q
    ||||||||||| | | |||||||| || ||||||||||||||||||||||| ||||||||||    
T  13204135 cacttttgaaaccgcggaaaactataaccattgaaaaattgtttaaaatctagcaaaataga 13204074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 13405271 - 13405339
Alignment:
Q  105 gtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctat 173  Q
    ||||||||| ||| | ||||||| |||||   ||||||||||||||||||||| |||||||||||||||    
T  13405271 gtcacttttaaaaccgccgaaaattaaaactgttgaaaaattgtttaaaatctcgcaaaatagacctat 13405339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 2399229 - 2399282
Alignment:
Q  121 ccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||| ||||||  ||||||||||||||||||||||| |||||| ||||||||    
T  2399229 ccgaaatctaaaacaattgaaaaattgtttaaaatcttacaaaattgacctata 2399282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 7524108 - 7524039
Alignment:
Q  105 gtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||| | ||||||||||||||| ||| |||||| |||||| |||  ||||||| |||||||    
T  7524108 gtcacttttgaaaccgccgaaaactaaaatccttgtaaaattatttaaagtctcccaaaatatacctata 7524039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 7536705 - 7536638
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||| | | |||||||| || | ||||||||||||||||| |||  |||||||||||||||    
T  7536705 cacttttgaaaccgcggaaaactataaccgttgaaaaattgtttaaagtctcacaaaatagacctata 7536638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 34127711 - 34127678
Alignment:
Q  141 aaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||| |||||||||||||||||||||||||    
T  34127711 aaaattgtataaaatcttgcaaaatagacctata 34127678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 7021930 - 7021862
Alignment:
Q  232 taaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatcttttaaattttcc 300  Q
    |||||||||||||||| |  || |||||||||| |||| ||||||| || ||||| |||||| ||||||    
T  7021930 taaaactgacacaaaattgcataaaatctcgcaaaatagacctataatcattaattttttaatttttcc 7021862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 26468693 - 26468629
Alignment:
Q  213 atttggatctgccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctata 277  Q
    |||||||||  |||||| |||||||||||| |||| | ||| |||||||||| |||| |||||||    
T  26468693 atttggatcaaccgaaacctaaaactgacataaaattgtataaaatctcgcaaaatagacctata 26468629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 7160329 - 7160406
Alignment:
Q  224 ccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatcttttaaattttccg 301  Q
    |||||| ||||||||||||||||| || || |||||||||| |||| ||||||| ||||| || |||||| |||||||    
T  7160329 ccgaaacctaaaactgacacaaaattacataaaatctcgcaaaatagacctataatcgttgattttttaatttttccg 7160406  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 25894680 - 25894732
Alignment:
Q  122 cgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||| ||||||||| | | ||||||||||||||||| ||||||||||||||||    
T  25894680 cgaacactaaaatcgtggtaaaattgtttaaaatctcgcaaaatagacctata 25894732  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 2619131 - 2619065
Alignment:
Q  108 acttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||||| | | |||||||| || | ||||||||||||||||| | | ||||||||||||||||    
T  2619131 acttttgaaagcgcggaaaactataaccgttgaaaaattgtttaaagtgtcgcaaaatagacctata 2619065  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 7441620 - 7441666
Alignment:
Q  127 actaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctat 173  Q
    |||||||| || | ||||||||||||||||||||||| |||||||||    
T  7441620 actaaaattatagcaaaattgtttaaaatcttgcaaagtagacctat 7441666  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 21259147 - 21259185
Alignment:
Q  136 attgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  21259147 attgaaaaattgtttaaagtcttgcaaattagacctata 21259185  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 25807192 - 25807139
Alignment:
Q  121 ccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||  ||| |||||||||||||||||||| || | ||||||||||||||    
T  25807192 ccgaaaacccaaaccattgaaaaattgtttaaaaactcgtaaaatagacctata 25807139  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 25911666 - 25911699
Alignment:
Q  141 aaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||||||| ||||||||||||||||    
T  25911666 aaaattgtttaaaatctcgcaaaatagacctata 25911699  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 27742699 - 27742666
Alignment:
Q  141 aaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||| |||||||||||||||||||||||||    
T  27742699 aaaattgtataaaatcttgcaaaatagacctata 27742666  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 49657035 - 49657076
Alignment:
Q  133 atcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||    
T  49657035 atcattgaaaaattgtttaaagtctcgcaaattagacctata 49657076  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 18113723 - 18113671
Alignment:
Q  121 ccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctat 173  Q
    ||||||||| ||| |||||||||||||||||||| || |||||||||||||||    
T  18113723 ccgaaaactcaaaccattgaaaaattgtttaaaacctcgcaaaatagacctat 18113671  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 9246810 - 9246877
Alignment:
Q  107 cacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||| | | |||||||| || | |||||||| |||||||| ||||||||||||||||||||    
T  9246810 cacttttgaaaccgcggaaaactataaccgttgaaaaaatgtttaaagtcttgcaaaatagacctata 9246877  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 32540631 - 32540698
Alignment:
Q  224 ccgaaaactaaaactgacacaaaaatatatgaaatctcgcataataaacctatagtcgttaatctttt 291  Q
    |||||| ||||||| ||||||||| | ||| |||||||| | |||| |||||||||||||||| ||||    
T  32540631 ccgaaacctaaaaccgacacaaaattgtataaaatctcgtaaaatagacctatagtcgttaatttttt 32540698  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 42225536 - 42225489
Alignment:
Q  121 ccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaataga 168  Q
    ||||||||||||| ||| | ||||||||||||||||| ||||||||||    
T  42225536 ccgaaaactaaaaccatcgtaaaattgtttaaaatctcgcaaaataga 42225489  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 44317785 - 44317747
Alignment:
Q  136 attgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  44317785 attgaaaaattgtataaaatctcgcaaaatagacctata 44317747  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 48708242 - 48708280
Alignment:
Q  136 attgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  48708242 attgaaaaattgtttaaagtcttgcaaattagacctata 48708280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 45807112 - 45807079
Alignment:
Q  141 aaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||||||| ||||||||||||||||    
T  45807112 aaaattgtttaaaatctcgcaaaatagacctata 45807079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 21852266 - 21852182
Alignment:
Q  90 acaaaatttatgtacgtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||| | ||||| ||||||||||||| |   ||||| || || | |||||||||||||||||  || ||||||||||||||||    
T  21852266 acaaaaatcatgtatgtcacttttgaaaccgtggaaaattataaacgttgaaaaattgtttaaagactcgcaaaatagacctata 21852182  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 45807233 - 45807197
Alignment:
Q  137 ttgaaaaattgtttaaaatcttgcaaaatagacctat 173  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  45807233 ttgaaaaattgtttaaaatcttacaaaatagatctat 45807197  T

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Target: scaffold0028 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 33704 - 33756
Alignment:
Q  122 cgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    |||||||||||| | ||||||||||||||||||||| | ||||| ||||||||    
T  33704 cgaaaactaaaaccgttgaaaaattgtttaaaatctcgtaaaatggacctata 33756  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 303669 - 303738
Alignment:
Q  105 gtcacttttgaaatcaccgaaaactaaaatcattgaaaaattgtttaaaatcttgcaaaatagacctata 174  Q
    ||||||||||||| |  |||||| ||||| | ||||||||||||||||| ||| | |||||| |||||||    
T  303669 gtcacttttgaaaccgtcgaaaattaaaaccgttgaaaaattgtttaaagtctcgtaaaataaacctata 303738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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