View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9183_low_1 (Length: 1508)
Name: NF9183_low_1
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 989; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 989; E-Value: 0
Query Start/End: Original strand, 287 - 1495
Target Start/End: Complemental strand, 6069624 - 6068394
Alignment:
| Q |
287 |
atttgaaactctcaatgaagccaaccgaggttgacatatgcatttgttatatagttgactcatagtccgtaaaaatgtgggttcaacaatgttgacattc |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069624 |
atttgaaactctcaatgaagccaaccgaggttgacatatgcatttggtatatagttgactcatagtccgtaaaaatgtgggttcaacaatgttgacattc |
6069525 |
T |
|
| Q |
387 |
tcttaacggtgggtttatcacttcagcggcaaaaaaccatgttggag---aagtttggttttttaccttctcttaaatcatggtggaaacatatacgaac |
483 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| || |
|
|
| T |
6069524 |
tcttaacggtggatttatcacttcagcggcaaaaaaccatgttggaggagaagtttggttttttaccttctcttaaatcacggttgaaacatatacggac |
6069425 |
T |
|
| Q |
484 |
gcacgtttgatggtgcaaactcccaaccaaacataggccaagtcttgaggtttttctttaacttgcaaatcttaaggaccttatccatctacatttttcg |
583 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069424 |
gcatgtttgatggtgcaaactcccaaccaaacataggccaagtcttgaggtttttcttaaacttgcaaatcttaaggaccttatccatctacatttttcg |
6069325 |
T |
|
| Q |
584 |
ttataaaaaactcttatgtatattgtgttgatatgaaaactaattcaacaattaattttatcaaacacaataaatttagtctgttaacttatctactaaa |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6069324 |
ttataaaaaactcttatgtatattgtgttgatatgaaaactaattcaacaattaattttatcaaacacaacaaatttagtctgttaacttatctactaaa |
6069225 |
T |
|
| Q |
684 |
cttttacgtaattttttcattatctattaaagaagtgctagtaacact--------------ctctaatattcactctcttattgatttaaattatcacg |
769 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
6069224 |
cttttacgtaattttttcattatctattaaagaagtgttagtaacactatattttgaacactctttaatattcactctcttgttgatttaaatcatcaca |
6069125 |
T |
|
| Q |
770 |
gatctatactttgaaataaaacccacacaaatggtaggacgtacaataattttattcaataaaagagtgattgtt-gtgagagtattcaaaaataaatgt |
868 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||| |||||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
6069124 |
gatctatattttggaatagaacccacacaaatgataggacatacaataattttattcaataa----gtaattgttcgtgagagtattcaaaaataaatgt |
6069029 |
T |
|
| Q |
869 |
tacaagcattcctcttcatctgctatcaaccaccgactagatttttacca--gagtccatatgtaaccttaaacatggtgaaacaaaagataagtgtaaa |
966 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069028 |
tacaagcattcctcttcatctgctatcaaccaccgactagatttttaccaaagagtccatatgtaaccttaaacatggtgaaacaaaagataagtgtaaa |
6068929 |
T |
|
| Q |
967 |
atgtaaacgtgcaatttcaattcttgtccaag-atgaaattgggaccacctttccagaaatatctagtatgacgctggtgatgacgaatgcaagcatgtt |
1065 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6068928 |
atgtaaacgtgcaatttcaattcttgtccaaggatgaaattgggaccacctttccagaaatatctagtatgacgctggtgatgacgaatgcaagcatgtt |
6068829 |
T |
|
| Q |
1066 |
ttactttgtttattcatgtttttaa-ttgattaacccaactaacaacaacaaaattaataaacaaatgggttggatctttattcatccattatcctagta |
1164 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6068828 |
ttactttgtttattcatgtttttaaattgattaacccaactaacaacaacaaaattaataaacaaatgggttggatctttattcatccattatcctagta |
6068729 |
T |
|
| Q |
1165 |
cagttacagacaacactatgatttcgttggtcaagtaaaaggtgttatatatgcttcacataaataaaatctcaactaggttaactgatttttcaataaa |
1264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6068728 |
cagttacagacaacactatgatttcgttggtcaagtaaaaggtgttatatatgcttcacataaataaaatctcaactaggttaactgatttttcaataaa |
6068629 |
T |
|
| Q |
1265 |
taaacctaccaacaccaacttgtacatt-nnnnnnnnncatcaagttctagtattaaagaaaattaaactt---aatcatgattcatgtataaattccaa |
1360 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
6068628 |
taaacctaccaacaccaacttgtacattaaaagaaaaacatcaagttctagtattaaagaaaattaaatttaaaaatcatgattcatgtataaattccaa |
6068529 |
T |
|
| Q |
1361 |
acgacagaagtttatcatgaaataacgagtcttgttttattaccagttcagatgctgttccctggtatactcacaagtctagaatcattgaatcaaagcc |
1460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6068528 |
acgacagaagtttatcatgaaataacgagtcttgttttattaccagttcagatgctgttccctggtatactcacaagtctagaatcattgaatcaaagcg |
6068429 |
T |
|
| Q |
1461 |
aaccaaaccaatacactaaccaatgactctctgct |
1495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6068428 |
aaccaaaccaatacactaaccaatgactctctgct |
6068394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 6069920 - 6069646
Alignment:
| Q |
17 |
caatttactattttattctttcctcacttagaatcaatcaactccttcctttggcatcaatattttggaccaccacagcaccttgtttgttaacctatcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6069920 |
caatttactattttattctttcctcacttagaatcaatcaactccttcctttggcatcaatattttggaccaccactgcaccttgtttgttaacctatcc |
6069821 |
T |
|
| Q |
117 |
tagcttccgtggtatgatcaatttttt--attataaacactctttcattcaggcccctcttttggtaggtaagctaaataaaacaaatcaactattatta |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069820 |
tagcttccgtggtatgatcaattttttttattataa-cactctttcattcaggcccctcttttggtaggtaagctaaataaaacaaatcaactattatta |
6069722 |
T |
|
| Q |
215 |
ataaatttccatgtttggccacaatcaaaataatattgcatctcaagatacgtatttttgttggaaaataatattt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069721 |
ataaatttccatgtttggccacaatcaaaataatattgcatctcaagatacgtatttttgttggaaaataatattt |
6069646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 393 - 521
Target Start/End: Complemental strand, 5144747 - 5144620
Alignment:
| Q |
393 |
cggtgggtttatcacttcagcggcaaaaaaccatgttggagaagtttggttttttaccttctcttaaatcatggtggaaacatatacgaacgcacgtttg |
492 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| ||||||| ||||||| ||| ||||||||||||| ||||| | |||||| ||| |||||||| |
|
|
| T |
5144747 |
cggtggatttatcacttatgcggcaaaaaaccacagaggagaagcttggtttgttagcttctcttaaatctcggtgggagcatatagaaacacacgtttg |
5144648 |
T |
|
| Q |
493 |
atggtgcaaactcccaaccaaacataggc |
521 |
Q |
| |
|
||||||||||||||| | ||||||||||| |
|
|
| T |
5144647 |
atggtgcaaactccc-agcaaacataggc |
5144620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 488 - 529
Target Start/End: Original strand, 34432342 - 34432383
Alignment:
| Q |
488 |
gtttgatggtgcaaactcccaaccaaacataggccaagtctt |
529 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
34432342 |
gtttgatggtgcaaactctcaaccaaacataagccaagtctt |
34432383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 730 - 785
Target Start/End: Original strand, 17537130 - 17537185
Alignment:
| Q |
730 |
ctctctaatattcactctcttattgatttaaattatcacggatctatactttgaaa |
785 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| || | ||||||| ||||||||| |
|
|
| T |
17537130 |
ctctcttatattcactctcttattggtttaaatcattatggatctacactttgaaa |
17537185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 726 - 837
Target Start/End: Complemental strand, 10950242 - 10950129
Alignment:
| Q |
726 |
aacactctctaatattcactctcttattgatttaaattatcacggatctatactttg-aaataaaacccacac-aaatggtaggacgtacaataatttta |
823 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| || | | ||||||||||| ||||| || ||| || ||||||| |||| |||| | |||| | |
|
|
| T |
10950242 |
aacactctctaatattcattctcttattagtttaaatcattatgagtctatactttgaaaatagaatccatacaaaatggtgggacatacattgatttca |
10950143 |
T |
|
| Q |
824 |
ttcaataaaagagt |
837 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
10950142 |
ttcaatgaaagagt |
10950129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 730 - 800
Target Start/End: Original strand, 32112745 - 32112816
Alignment:
| Q |
730 |
ctctctaatattcactctcttattgatttaaattatcacggatctatactttg-aaataaaacccacacaaa |
800 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||||||| |||||| |||||||||||||||||| |
|
|
| T |
32112745 |
ctctctaatattcactctcttattgttttaaatcattgtggatctacactttgaaaataaaacccacacaaa |
32112816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 730 - 785
Target Start/End: Original strand, 6098805 - 6098860
Alignment:
| Q |
730 |
ctctctaatattcactctcttattgatttaaattatcacggatctatactttgaaa |
785 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
6098805 |
ctctctaatactcactctcttattgatttaaattattgtggatctacactttgaaa |
6098860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 717 - 754
Target Start/End: Complemental strand, 43506700 - 43506663
Alignment:
| Q |
717 |
agtgctagtaacactctctaatattcactctcttattg |
754 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
43506700 |
agtgctagcaacactctctaatactcactctcttattg |
43506663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 726 - 795
Target Start/End: Original strand, 37552973 - 37553043
Alignment:
| Q |
726 |
aacactctctaatattcactctcttattgatttaaattatcacggatctatactttg-aaataaaacccac |
795 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| || ||||||| |||||| ||||||||||||| |
|
|
| T |
37552973 |
aacactctttaatactcactctcttattgatttaaatcattgtggatctacactttgaaaataaaacccac |
37553043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 726 - 762
Target Start/End: Complemental strand, 46806770 - 46806734
Alignment:
| Q |
726 |
aacactctctaatattcactctcttattgatttaaat |
762 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46806770 |
aacactctctaatattcactctcttattaatttaaat |
46806734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 730 - 845
Target Start/End: Original strand, 18427178 - 18427295
Alignment:
| Q |
730 |
ctctctaatattcactctcttattgatttaaattatcacggatctatactttg-aaataaaacccacac-aaatggtaggacgtacaataattttattca |
827 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || || |||| |||||| ||||| ||||||||| ||||||| |||| |||| | |||| || || |
|
|
| T |
18427178 |
ctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaatagaacccacacaaaatggtgggacatacattgatttcatcca |
18427277 |
T |
|
| Q |
828 |
ataaaagagtgattgttg |
845 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
18427278 |
ataaatgagtgagtgttg |
18427295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 730 - 884
Target Start/End: Complemental strand, 46161099 - 46160944
Alignment:
| Q |
730 |
ctctctaatattcactctcttattgatttaaattatcacggatctatacttt-gaaataaaacccacacaaa-tggtaggacgtacaataattttattca |
827 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || | ||||||| ||||| |||||| |||| ||||||| |||| |||| | | | |||| || || |
|
|
| T |
46161099 |
ctctctaatactcactctcttattggtttaaatcattatggatctacactttggaaatagaaccaacacaaagtggtcggacatgtattgatttcatcca |
46161000 |
T |
|
| Q |
828 |
ataaaagagtgattgttgtgagagtattcaaaaataaatgttacaagcattcctctt |
884 |
Q |
| |
|
|||||||||||| || | |||||| ||||||| | | |||| | |||||||||||| |
|
|
| T |
46160999 |
ataaaagagtgagtgct-agagagtgttcaaaagtgagtgttgctagcattcctctt |
46160944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 730 - 763
Target Start/End: Original strand, 49418447 - 49418480
Alignment:
| Q |
730 |
ctctctaatattcactctcttattgatttaaatt |
763 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
49418447 |
ctctctagtattcactctcttattgatttaaatt |
49418480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 730 - 844
Target Start/End: Complemental strand, 9470233 - 9470117
Alignment:
| Q |
730 |
ctctctaatattcactctcttattgatttaaattatcacggatctatactttg-aaataaaacccacacaaa-tggtaggacgtacaataattttattca |
827 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || || |||| |||||| |||| |||||| ||||| |||| |||| |||| | |||| || || |
|
|
| T |
9470233 |
ctctctaatattcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatcca |
9470134 |
T |
|
| Q |
828 |
ataaaagagtgattgtt |
844 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
9470133 |
ataaaagagtgagtgtt |
9470117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 730 - 765
Target Start/End: Complemental strand, 17461018 - 17460983
Alignment:
| Q |
730 |
ctctctaatattcactctcttattgatttaaattat |
765 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17461018 |
ctctctaatattcactctcttattaatttaaattat |
17460983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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