View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_10 (Length: 542)
Name: NF9183_low_10
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 24998146 - 24998480
Alignment:
| Q |
1 |
atggtccttaactatggtttaaggaccatggttaaattgtttttcttgagggagcagcattacatggtggactctcagtgagattgaaaacaagaaagaa |
100 |
Q |
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| T |
24998146 |
atggtccttaactatggttcaaggaccatggttaaattgtttttctcgagggagcagcattacatggtggactctcagtgagattgaaaacagaaaagaa |
24998245 |
T |
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| Q |
101 |
acgggtagggagggagattagtgtggtagataagggtgcgttcactgcacatacatgaaccggcgagactcaagcatgagaacaaatgacgcttacacaa |
200 |
Q |
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| T |
24998246 |
acgggtagggagggagattagtgtggtagataagggtgcattcactacacatacatgaaccggcgagactcaagcatgaaaacaaatgacgctcacgcaa |
24998345 |
T |
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| Q |
201 |
tggaaattggcatcaccgttgccctaaataattctg-----gnnnnnnnnnncttatgaatta--ttttgtgttgaaattttattgatttattcaatcca |
293 |
Q |
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| T |
24998346 |
tggaaattggcatcaccgttgccctcgaaaattctgttttttttttctttttcttatgaattattttttgtgttgaaattttattgatttattcaatcca |
24998445 |
T |
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| Q |
294 |
gttttcattatgattaatcgatttttgtcatgtct |
328 |
Q |
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| T |
24998446 |
gttttcattatgattaatcaaattttgtcatgtct |
24998480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 365 - 525
Target Start/End: Original strand, 24998519 - 24998679
Alignment:
| Q |
365 |
caatgcaaatatggttagtgttataggttttacagtttaatgttctctgttagtatacaggggttatatacttttagtgatttggttgaagggcatgggg |
464 |
Q |
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| T |
24998519 |
caatgcaaatatggttagtgttataggttttacagtttaatgttctctgtcggtatccaggggctatatactcttagtgatttggttgaagggcatgggg |
24998618 |
T |
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| Q |
465 |
aacaatgaaggtaatgataagtttctctttaatttcactgttatatgagagtaattgatgt |
525 |
Q |
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| T |
24998619 |
aacaatgaaggtaatgataagtttctctttaatttcactgttatatgagagtaattgatgt |
24998679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 24998052 - 24998006
Alignment:
| Q |
115 |
agattagtgtggtagataagggtgcgttcactgcacatacatgaacc |
161 |
Q |
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| T |
24998052 |
agattagtgtggtggataagggtgcgctcactgtacatacatgaacc |
24998006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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