View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9183_low_14 (Length: 537)
Name: NF9183_low_14
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 537
Target Start/End: Complemental strand, 30277841 - 30277323
Alignment:
| Q |
19 |
tcagcggaaatacccatgtcttataaaacaacctaggaacagaaccttcaaaaaaccatataatgaatttctttcttcacttttcattaacaccnnnnnn |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30277841 |
tcagcggaaatacccatgtcttataaaacaacctaggaacagaaccttcaaaaaaccatataatgaatttctttcttcacttttcattaacaccaaaaaa |
30277742 |
T |
|
| Q |
119 |
ntcattgctaatatgcaaatggaatcttcatctgctcccaggttccggttcagagaccactcactcccggagcctcgaaactcgatacactcttcagagc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30277741 |
atcattgctaatatgcaaatggaatcttcatctgctcccaggttccggttcagagaccactcactcccggagcctcgaaactcgatacactcttcagagc |
30277642 |
T |
|
| Q |
219 |
cgagctccgacgacgtggtttccgtcctctcactttctaattctaataacagtattgatcaacctgatgacaatgccaaacttgatattgaatccatcac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30277641 |
cgagctccgacgacgtggtttccgtcctctcactttctaattctaataacagtattgatcgacctgatgacaatgccaaactagatattgaatccatcac |
30277542 |
T |
|
| Q |
319 |
tggaagggtatactttcatatataattcattttcttttataaataacataatcatcacttcaacatgtttcataatatatgttttggtttaataatgatg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30277541 |
aggaagggtatactttcatatataattcattttattttataaataacataatcatcacttcaacatgtttcataatatatgttttggcttaataatgatg |
30277442 |
T |
|
| Q |
419 |
atgacagggcatcaaacatctgtgtgatgaacttcaagagctcaaggaagcagcaaatctagatttacataaaaatatctttgctaactattcctcattc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30277441 |
atgacagggcatcaaacatctgtgtgatgaacttcaagagctcaaggaagcagcaaatctagatttacataaaaatatctttgctaactattcctcattc |
30277342 |
T |
|
| Q |
519 |
cttaggtaaggtaattaat |
537 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30277341 |
cttaggtaaggtaattaat |
30277323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University