View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_18 (Length: 512)
Name: NF9183_low_18
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Complemental strand, 41704671 - 41704187
Alignment:
| Q |
16 |
catcatggaccacttgataagtaattcacttgttaaagggaccccaaaggttaattgtttctgaagaaacaaagtacaaaacattgtacactgaaccgca |
115 |
Q |
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| T |
41704671 |
catcatggaccacttgataagtaattcacttgttaaagggaccccaaaggttaattgtttctgaagaaacaaagtacaaaacattttacactgaaccgca |
41704572 |
T |
|
| Q |
116 |
acctagtggacgggactctagtccttccaattagtatgtctcgtaaggttctgtatatagttattcttttctaaacttttaattataatgcttatttgag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704571 |
acctagtggacgggactctagtccttccaattagtatgtctcgtaaggttctgtatatagttattcttttctaaacttttaattataatgcttatttgag |
41704472 |
T |
|
| Q |
216 |
ttgtagggcaggaccaaaaataagataaatacaatattggttgtgcagctaagctaacattgacaattcagaagctcttacacgtttatccgactcttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704471 |
ttgtagggcaggaccaaaaataagataaatacaatattggttgtgcagctaagctaacattgacaattcagaagctcttacacgtttatccgactcttat |
41704372 |
T |
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| Q |
316 |
tgagaccattcctgtcgtttggaagttattttaagacacacaataaattttgtggacctggaccaaatcatttttgtgttgttgctcgatcgtttcattc |
415 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704371 |
tgagaccattcctgtcgtttggaagttattttaagtcacacaataaattttgtggacctggaccaaatcatttttgtgttgttgctcgatcgtttcattc |
41704272 |
T |
|
| Q |
416 |
ttttgtttgtatatgaaaattatcacacctgatataagacatttaatctactaaatttgagactgtgcatcaatctgtgtctctg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41704271 |
ttttgtttgtatatgaaaattatcacacctgatataagacgtttaatctactaaatttgagactgtgcatcaatctgtgtttctg |
41704187 |
T |
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