View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_20 (Length: 507)
Name: NF9183_low_20
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 6918008 - 6917518
Alignment:
| Q |
1 |
aaggacatacattcttggatgaaggaagcgttcatggtagaagatttggtaaattgaaaaaagacgaatttgacggttacaactccgacaaccatcctcg |
100 |
Q |
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| T |
6918008 |
aaggacatacattcttggatgaaggaagcgttcatggtagaagatttggcaaattgaaaaaagacgaatttgacggttacaactccgacaaccatcctcg |
6917909 |
T |
|
| Q |
101 |
aaaaaacagccctatcaaaacaactgatgcaccccatttagatcctcaaatggcatcagataattcaccttatgatgcatctctttcaccattatcaaaa |
200 |
Q |
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| T |
6917908 |
aaaaaacagccctatcaaaacaactgatgcaccccatttagatcctcaaatggcatcagataattcaccttatgatgcatctctttcaccattatcaaaa |
6917809 |
T |
|
| Q |
201 |
tcaccatggcatgttaatgaagaagcttcgtctagcgaagaagctcttgttggttcattagttcgcgaagaaggtcatatttactcgcttgcagcgacga |
300 |
Q |
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| T |
6917808 |
tcaccatggcatgttaatgaagaagcttcgtctagcgaagaagctcttgttggttcattagttcgcgaagaaggtcatatttactcgcttgcagcgacga |
6917709 |
T |
|
| Q |
301 |
aagatttattatacaccggttctgatagtaaaaacattcgtgtttggaagaatcaaaaggaattcgctggttttaaatcaaatagtggtttagttaaagc |
400 |
Q |
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| T |
6917708 |
aggatttattatacaccggttctgatagtaaaaacattcgtgtttggaagaatcaaaaggaattcgcgggttttaaatcaaatagtggtttagttaaagc |
6917609 |
T |
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| Q |
401 |
aattgttatagccggtgagaagattctcaccggccatcaagatggaagaattcgtgtttggagagtttcaaacaagaatgaacaaacttat |
491 |
Q |
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| T |
6917608 |
aattgttatagccggtgagaagattctcaccggccatcaagatggaagaattcgtgtttggagagtttcaaacaagaatgaacaaacttat |
6917518 |
T |
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