View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_23 (Length: 493)

Name: NF9183_low_23
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_23
NF9183_low_23
[»] chr1 (3 HSPs)
chr1 (12-493)||(36447003-36447483)
chr1 (125-470)||(30636757-30637105)
chr1 (12-116)||(30636580-30636686)
[»] chr8 (8 HSPs)
chr8 (125-480)||(33386267-33386627)
chr8 (125-447)||(33399040-33399368)
chr8 (125-480)||(33379291-33379651)
chr8 (127-384)||(33370014-33370274)
chr8 (13-124)||(33386690-33386803)
chr8 (27-124)||(33379714-33379813)
chr8 (13-124)||(33399431-33399544)
chr8 (13-121)||(33370342-33370452)
[»] chr3 (2 HSPs)
chr3 (125-480)||(9815282-9815642)
chr3 (13-121)||(9815106-9815216)
[»] chr4 (2 HSPs)
chr4 (155-408)||(24032116-24032374)
chr4 (13-124)||(24032460-24032573)
[»] chr5 (5 HSPs)
chr5 (144-260)||(7239886-7240002)
chr5 (144-260)||(7245062-7245178)
chr5 (144-247)||(15601628-15601731)
chr5 (144-247)||(7186039-7186142)
chr5 (144-260)||(7198665-7198781)


Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 12 - 493
Target Start/End: Original strand, 36447003 - 36447483
Alignment:
Q  12 atggacatcaacacgtcgaccatcaatggtgatgaactactaatgagaaggggtatcacaagattaatgttcatgtcctttgaaatgtgatctaaacttt 111  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36447003 atggacatcaacacctcgaccatcaatggtggtgaactactaatgagaaggggtatcacaagattaatgttcatatcctttgaaatgtgatctaaacttt 36447102  T
Q  112 accttgaatcttatttataatgaattaggtctttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36447103 accttgaatcttatttataatgaattaggtctttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtct 36447202  T
Q  212 cctccatccaggattaagtctccaacattgatcaattacattcattttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagat 311  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36447203 cctccatccaagattaagtctccaacattgattaattaaattcattttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagat 36447302  T
Q  312 gtggccataacaagtaaaataaggcaccaaaagacagagttgtttgcttgatgacaaaccatggttcaatatacttgttttttatttaattataataaca 411  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36447303 gtggccataacaagtaaaataaggcaccaaaagac--agttgtttgcttgatgacaaaccatggttcaatatacttgttttttatttaattataataaca 36447400  T
Q  412 attgaattatttagaagagagggatagtaaggaggagaaggtttccgtggtttttatatcagagaataacag-ttgagcaagg 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  36447401 attgaattatttagaagagagggatagtaaggaggagaaggtttccgttgtttttatatcagaaaataacagtttgagcaagg 36447483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 125 - 470
Target Start/End: Original strand, 30636757 - 30637105
Alignment:
Q  125 tttataatgaattaggtctttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccagga 224  Q
    ||||||||| |||||| |||| || |||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| || ||    
T  30636757 tttataatggattaggcctttgccaatgttgtttgtcatttttcctgcatagcccactgagcaagttgcaagttgttgtcgatgtttcctccattcaaga 30636856  T
Q  225 ttaagtctccaacattgatcaattacattcattttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagatgtggccat---aa 321  Q
    |||| ||||||||| ||||||||| |||||||||   | ||||||||||| ||||| |||||||||||||| | | | |||||  ||||| ||||   ||    
T  30636857 ttaaatctccaacaatgatcaattgcattcatttcaatgccttctatttttgattgtttggtagaactaacctctatagtgaataatgtgaccataacaa 30636956  T
Q  322 caagtaaaataaggcaccaaaagacagagttgtttgcttgatgacaaaccatggttcaatatacttgttttttatttaattataataacaattgaattat 421  Q
    |||||||||||| || |||||||||| ||||| || |||||||| |||||||||||||||||||| | ||||||||||||||||||    | | ||||||    
T  30636957 caagtaaaataaagcgccaaaagacatagttgatttcttgatgaaaaaccatggttcaatatactagatttttatttaattataatttgtaataaattat 30637056  T
Q  422 ttagaagagagggatagtaaggaggagaaggtttccgtggtttttatat 470  Q
    | |||||| |||||||||||||||||  |||||| |  |||||||||||    
T  30637057 tgagaagaaagggatagtaaggaggatgaggtttacacggtttttatat 30637105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 30636580 - 30636686
Alignment:
Q  12 atggacatcaacacgtcgaccatcaatggtgatgaa-ctactaatgagaaggggtatcacaagattaatgttcatgtc-ctttgaaatgtgatctaaact 109  Q
    |||||||||||| |  ||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| | |||||    
T  30636580 atggacatcaacgccgcgaccgtcaattgtgatgaaactactaatgagaaggggtttcacaagattaatgttcatgtctctttggaatgtgacccaaact 30636679  T
Q  110 ttacctt 116  Q
    |||||||    
T  30636680 ttacctt 30636686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 125 - 480
Target Start/End: Complemental strand, 33386627 - 33386267
Alignment:
Q  125 tttataatgaattaggtctttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccagga 224  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |||||||||||| | | ||||||||||||||||||||||||| |||||    
T  33386627 tttataatggattaagtctttaccaatgttgtttgtcatttttcccgcatatcccaccgagcaattagcaagttgttgtcgatgtttcctccattcagga 33386528  T
Q  225 ttaagtctccaacattgatcaattacattcattttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagatgtggccata---a 321  Q
    |||| ||||||||||||||||||||||||||||| | | |||||||| | ||||| ||| |  |||||||||| ||| || ||| ||||  |||||   |    
T  33386527 ttaaatctccaacattgatcaattacattcatttccattccttctatctcagatttctttgctgaactaacatttgtagtaaaaaatgttaccataacga 33386428  T
Q  322 caagtaaaataaggcaccaaaagacagagttgtttgcttgatgacaaaccatggttca--atatacttgttttttatttaattataataacaattgaatt 419  Q
    || ||||||||| | ||||| |||| |||||| || | |||||| || ||||| ||||  |||||||||| ||| | ||||||||||||  |||||  ||    
T  33386427 caggtaaaataaagtaccaatagacggagttggttacatgatgaaaagccatgattcaatatatacttgtctttgaattaattataatactaattgtgtt 33386328  T
Q  420 atttagaagagagggatagtaaggaggagaaggtttccgtggtttttatatcagagaataa 480  Q
    ||| |||||||||||||| |||||||||  |||||| | || |||||||||  ||||||||    
T  33386327 attgagaagagagggatattaaggaggaagaggtttgcttgatttttatattggagaataa 33386267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 125 - 447
Target Start/End: Complemental strand, 33399368 - 33399040
Alignment:
Q  125 tttataatgaattaggtctttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccagga 224  Q
    ||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||   | |||||||||||||| |||||||||| |||||    
T  33399368 tttataatggattaggtctttaccaatgttgtttgtcattttccctgcatatcccactgagcaaagagcaagttgttgtcgatatttcctccattcagga 33399269  T
Q  225 ttaagtctccaacattgatcaattacattcattttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagatgtggccata---a 321  Q
    || | |||||||||||||||||| |||||||||| | | |||||||| | ||||||||||| ||||||||| | ||| || ||| ||||| ||| |   |    
T  33399268 ttgaatctccaacattgatcaatcacattcatttccatgccttctatctcagattgcttggaagaactaacttttgtagtaaaaaatgtgaccaaaacta 33399169  T
Q  322 caagtaaaataaggcaccaaaagacagagttgtttgcttgatgacaaaccatggttcaata--tacttgtttttt-atttaattataataacaattgaat 418  Q
    |||| ||||||| ||||||||||||||||||  || || | |||||||||||| |||||||  || ||||||||| | || |||| ||||  |||||  |    
T  33399168 caaggaaaataaagcaccaaaagacagagtttattactcggtgacaaaccatgattcaatatgtatttgttttttgaattgattagaatactaattgtgt 33399069  T
Q  419 tatttagaagagagggatagtaaggagga 447  Q
    |||| ||||||||||||||||||||||||    
T  33399068 tattgagaagagagggatagtaaggagga 33399040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 125 - 480
Target Start/End: Complemental strand, 33379651 - 33379291
Alignment:
Q  125 tttataatgaattaggtctttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccagga 224  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |||||||||||| | | ||||||||||||||||||||||||| |||||    
T  33379651 tttataatggattaagtctttaccaatgttgtttgtcatttttcccgcatatcccaccgagcaattagcaagttgttgtcgatgtttcctccattcagga 33379552  T
Q  225 ttaagtctccaacattgatcaattacattcattttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagatgtggccata---a 321  Q
    |||| ||||||||||||||| || |||||||||| | | |||||||| | ||||| ||| |  |||||||||| ||| || ||| ||||  |||||   |    
T  33379551 ttaaatctccaacattgatcgatcacattcatttccatgccttctatctcagatttctttgctgaactaacatttgtagtaaaaaatgttaccataacga 33379452  T
Q  322 caagtaaaataaggcaccaaaagacagagttgtttgcttgatgacaaaccatggttca--atatacttgttttttatttaattataataacaattgaatt 419  Q
    || ||||||||| | ||||| |||| |||||| || | |||||| || ||||| ||||  |||||||||| ||| | ||||| ||||||  |||||  ||    
T  33379451 caggtaaaataaagtaccaatagacggagttggttacatgatgaaaagccatgattcaatatatacttgtctttgaattaataataatactaattgtgtt 33379352  T
Q  420 atttagaagagagggatagtaaggaggagaaggtttccgtggtttttatatcagagaataa 480  Q
    ||| |||||||||||||| |||||||||  |||||| | || |||||||||  ||||||||    
T  33379351 attgagaagagagggatattaaggaggaagaggtttgcttgatttttatattggagaataa 33379291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 127 - 384
Target Start/End: Complemental strand, 33370274 - 33370014
Alignment:
Q  127 tataatgaattaggtctttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccaggatt 226  Q
    ||||||| |||| ||| || |||||||||||||||||||| ||| |||| ||||| ||||||  ||||||||||||||||||||||||||||  ||||||    
T  33370274 tataatggattaagtccttgcctatgttgtttgtcattttccctacatatcccactgagcaaacggtaagttgttgtcgatgtttcctccatttaggatt 33370175  T
Q  227 aagtctccaacattgatcaattacattcattttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagatgtggccat---aaca 323  Q
     | |||||||||||||||||| |||||||||| | |  ||||||| |||| || || |||||||||| ||| |||||| ||| |||||  |||   ||||    
T  33370174 gaatctccaacattgatcaatcacattcatttccttgtcttctatcttagttttctcggtagaactagcatttgttgtaaaaaatgtgagcataacaaca 33370075  T
Q  324 agtaaaataaggcaccaaaagacagagttgtttgcttgatgacaaaccatggttcaatata 384  Q
    ||||||||||  ||||||||||| |||||| || ||||||||||||||||| ||| |||||    
T  33370074 agtaaaataaaacaccaaaagacggagttgattacttgatgacaaaccatgattctatata 33370014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 33386803 - 33386690
Alignment:
Q  13 tggacatcaacacgtcgaccatcaatggtgatgaa-ctactaatgagaaggggtatcacaagattaatgttcatgtcc-tttgaaatgtgatctaaactt 110  Q
    |||||||  |||| |||||||||||||||| |||| ||||| |||||||||||| ||||||| ||||||| ||| ||| |||| ||||||||| ||||||    
T  33386803 tggacattgacacctcgaccatcaatggtggtgaaactactgatgagaaggggtttcacaagcttaatgtccatatccctttggaatgtgatccaaactt 33386704  T
Q  111 taccttgaatctta 124  Q
    ||||||||||||||    
T  33386703 taccttgaatctta 33386690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 33379813 - 33379714
Alignment:
Q  27 tcgaccatcaatggtgatgaa-ctactaatgagaaggggtatcacaagattaatgttcatgtcc-tttgaaatgtgatctaaactttaccttgaatctta 124  Q
    |||||||||||||||| |||| ||||| |||||||||||| ||||||| ||||||| ||| ||| |||| ||||||||| ||||||||||||||||||||    
T  33379813 tcgaccatcaatggtggtgaaactactgatgagaaggggtttcacaagcttaatgtccatatccctttggaatgtgatccaaactttaccttgaatctta 33379714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 33399544 - 33399431
Alignment:
Q  13 tggacatcaacacgtcgaccatcaatggtgatgaa-ctactaatgagaaggggtatcacaagattaatgttcatgtccttt-gaaatgtgatctaaactt 110  Q
    |||||||| |||| |||||| ||||||||  | || || ||||||||||| ||| ||||||| ||||||||||| |||||| | ||||||||| ||||||    
T  33399544 tggacatcgacacctcgaccgtcaatggtagtaaaactgctaatgagaagcggtctcacaagtttaatgttcatatccttttggaatgtgatccaaactt 33399445  T
Q  111 taccttgaatctta 124  Q
    ||||||||||||||    
T  33399444 taccttgaatctta 33399431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 33370452 - 33370342
Alignment:
Q  13 tggacatcaacacgtcgaccatcaatggtgatgaa-ctactaatgagaaggggtatcacaagattaatgttcatg-tcctttgaaatgtgatctaaactt 110  Q
    |||||||| || | |||||| ||||||||| |||| ||||| |||||||||||| ||||||| |||||||||||| ||| || || ||||||| ||||||    
T  33370452 tggacatcgacgcctcgaccgtcaatggtggtgaaactactgatgagaaggggtctcacaagcttaatgttcatgttccgtttaagtgtgatccaaactt 33370353  T
Q  111 taccttgaatc 121  Q
    | |||||||||    
T  33370352 tgccttgaatc 33370342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 125 - 480
Target Start/End: Original strand, 9815282 - 9815642
Alignment:
Q  125 tttataatgaattaggtctttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccagga 224  Q
    ||||||||| |||| ||| ||||||||||||||||||||||| ||| |||| ||||| ||||||   | ||||||||||||||||||||||||| |||||    
T  9815282 tttataatggattaagtccttacctatgttgtttgtcattttccctacatatcccactgagcaaacagcaagttgttgtcgatgtttcctccattcagga 9815381  T
Q  225 ttaagtctccaacattgatcaattacattcattttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagatgtggccat---aa 321  Q
    || | |||||||||||||||||| |||||||||| | |  ||||||| |||| || || |  ||||||| |||  ||| | ||| |||||  |||   ||    
T  9815382 ttgaatctccaacattgatcaatcacattcatttccttgtcttctatcttagttttctggaaagaactagcattcgttttaaaaaatgtgagcataacaa 9815481  T
Q  322 caagtaaaataaggcaccaaaagacagagttgtttgcttgatgacaaaccatggttc--aatatacttgttttttatttaattataataacaattgaatt 419  Q
    ||||||||||||  || |||||||| |||||| || ||||||||||| ||||| |||  ||||||||||||||| | ||||||||||||  |||||| ||    
T  9815482 caagtaaaataaaacatcaaaagacggagttgattacttgatgacaagccatgattcttaatatacttgtttttaaattaattataatactaattgagtt 9815581  T
Q  420 atttagaagagagggatagtaaggaggagaaggtttccgtggtttttatatcagagaataa 480  Q
    ||| |||||||  |||| ||||| || |  |||||| | ||||||||||||  ||||||||    
T  9815582 attgagaagagttggatggtaagaagcaagaggtttgcttggtttttatattggagaataa 9815642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 9815106 - 9815216
Alignment:
Q  13 tggacatcaacacgtcgaccatcaatggtgatgaa-ctactaatgagaaggggtatcacaagattaatgttcatg-tcctttgaaatgtgatctaaactt 110  Q
    |||||||| || | |||||||||||||||| |||| ||||| |||||||||||| ||||||| |||||||||||| ||||||  ||||||||| ||||||    
T  9815106 tggacatcgacgcctcgaccatcaatggtggtgaaactactgatgagaaggggtctcacaagcttaatgttcatgttccttttgaatgtgatccaaactt 9815205  T
Q  111 taccttgaatc 121  Q
    | |||||||||    
T  9815206 ttccttgaatc 9815216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 155 - 408
Target Start/End: Complemental strand, 24032374 - 24032116
Alignment:
Q  155 gtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccaggattaagtctccaacattgatcaattacattc 254  Q
    |||||||||||| ||| |||| ||||| ||||||  || ||||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||    
T  24032374 gtttgtcattttccctacatatcccactgagcaaacggcaagttgttgtcgatgtttcctccattcaggattgaatctccaacattgatcaatcacattc 24032275  T
Q  255 attttcgtaccttctattttagattgcttggtagaactaacatgtgttgtgaaagatgtggccat---aacaagtaaaataaggcaccaaaagacagagt 351  Q
    |||| | |  ||||||| || | || || |||||||||| |||  ||||| ||| |||||   ||   ||||||||||||||  ||||||||||| ||||    
T  24032274 atttccttgtcttctatctttgttttctcggtagaactagcattcgttgtaaaaaatgtgaggataccaacaagtaaaataaaacaccaaaagacggagt 24032175  T
Q  352 tgtttgcttgatgacaaaccatggttc--aatatacttgttttttatttaattataata 408  Q
    ||||| ||||||||||| ||||| |||   |||||||||||||| | ||||||||||||    
T  24032174 tgtttacttgatgacaagccatgattctatatatacttgtttttaaattaattataata 24032116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 24032573 - 24032460
Alignment:
Q  13 tggacatcaacacgtcgaccatcaatggtgatgaa-ctactaatgagaaggggtatcacaagattaatgttcatg-tcctttgaaatgtgatctaaactt 110  Q
    |||||||| || | |||||| ||||||||| |||| ||||| |||||||||||| ||||||| |||||||||||| ||||||  ||||||||| ||||||    
T  24032573 tggacatcgacgcctcgaccgtcaatggtggtgaaactactgatgagaaggggtctcacaagcttaatgttcatgttccttttgaatgtgatccaaactt 24032474  T
Q  111 taccttgaatctta 124  Q
    | ||||||||||||    
T  24032473 tgccttgaatctta 24032460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 7240002 - 7239886
Alignment:
Q  144 ttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccaggattaagtctccaacattgat 243  Q
    ||||| |||||||||||||| ||||| |||||||| ||||||||||| |  |||||||||| |||||| |||||| |||||||  ||||||||||| |||    
T  7240002 ttaccaatgttgtttgtcatctttccagcatagcctaccgagcaagtcgctagttgttgtctatgttttctccattcaggatttggtctccaacatcgat 7239903  T
Q  244 caattacattcattttc 260  Q
    |||| |  |||||||||    
T  7239902 caatcatgttcattttc 7239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 7245178 - 7245062
Alignment:
Q  144 ttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccaggattaagtctccaacattgat 243  Q
    ||||| |||||||||||||| ||||| |||||||| ||||||||||| |  |||||||||| |||||| |||||| |||||||  ||||||||||| |||    
T  7245178 ttaccaatgttgtttgtcatctttccagcatagcctaccgagcaagtcgctagttgttgtctatgttttctccattcaggatttggtctccaacatcgat 7245079  T
Q  244 caattacattcattttc 260  Q
    |||| |  |||||||||    
T  7245078 caatcatgttcattttc 7245062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 15601628 - 15601731
Alignment:
Q  144 ttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccaggattaagtctccaacattgat 243  Q
    ||||| |||||||||||||| ||||| |||||||| || |||||||| |  |||||||||| |||||| |||||| |||||||  ||||||||||| |||    
T  15601628 ttaccaatgttgtttgtcatctttccagcatagcctacagagcaagttgctagttgttgtctatgttttctccattcaggatttggtctccaacatcgat 15601727  T
Q  244 caat 247  Q
    ||||    
T  15601728 caat 15601731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 7186039 - 7186142
Alignment:
Q  144 ttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccaggattaagtctccaacattgat 243  Q
    ||||| ||||| |||||||| ||||| |||||||| || |||||||| |  |||||||||| |||||| |||||| |||||||  ||||||||||| |||    
T  7186039 ttaccaatgttttttgtcatctttccagcatagcctacagagcaagttgctagttgttgtctatgttttctccattcaggatttggtctccaacatcgat 7186138  T
Q  244 caat 247  Q
    ||||    
T  7186139 caat 7186142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 7198665 - 7198781
Alignment:
Q  144 ttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtcgatgtttcctccatccaggattaagtctccaacattgat 243  Q
    ||||| ||||| |||||||| ||||||||||| || |  ||||||||    | |||||||| |||||| |||||| |||||||  ||||||||||| |||    
T  7198665 ttaccgatgttatttgtcatctttcctgcataacctatagagcaagtcactaattgttgtctatgttttctccattcaggatttggtctccaacatcgat 7198764  T
Q  244 caattacattcattttc 260  Q
    |||| |  |||||||||    
T  7198765 caatcatgttcattttc 7198781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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