View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_24 (Length: 493)
Name: NF9183_low_24
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 95 - 424
Target Start/End: Original strand, 52294442 - 52294764
Alignment:
| Q |
95 |
gaaaactcggatgatctcaataatattattgaataaacttggaaaacaagtcaaatgtatgtttaattaattgatttcataaagacatttttgtagtttt |
194 |
Q |
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| T |
52294442 |
gaaaactcggatgatctcaataatattattgaataaacttggaaaacaagtcaaatgtatgtttaattaatt-------taaagacatttttgtagtttt |
52294534 |
T |
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| Q |
195 |
nnnnnnntagcaaagttacaacagtttcttcctgcagacccgataaacatttcaaaacaagcactaaatccagatgaacaaggcaaatccttggcttttg |
294 |
Q |
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| T |
52294535 |
caaaaaatagcaaagttacaacagtttcttcctgcagacccgataaacatttcgaaacaagcactaaatccagatgaacaaggcaaatccttggcttttg |
52294634 |
T |
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| Q |
295 |
cactataagttcttatctatccgcgttctttatctgatgttgattgcccaaccctaccattcccttcctatgatacacaaggtagacccacacacactta |
394 |
Q |
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| T |
52294635 |
cactacaagttcttatctatccgcgttctttatctgatgttgattgcccaaccctaccattcccttcctatgatacacaaggtagacccacacacactta |
52294734 |
T |
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| Q |
395 |
attttttgttagtaacatatatgtactcag |
424 |
Q |
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| T |
52294735 |
attttttgttagtaacatatatgtactcag |
52294764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 52294365 - 52294420
Alignment:
| Q |
19 |
atcgaatccacactccatcatttcatacgtctttacaatatattttatgatctcaata |
76 |
Q |
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| T |
52294365 |
atcgaatccacactccatcatttcatacgtctttaca--atattttatgatctcaata |
52294420 |
T |
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