View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_27 (Length: 487)
Name: NF9183_low_27
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 26529535 - 26529062
Alignment:
| Q |
1 |
tcattcgttggtagaatgaaatgaaagagtagcaatgcaatggtaggattccgaagtccaaaaggaatgttccgtcctttttctttcaaatattggannn |
100 |
Q |
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| T |
26529535 |
tcattcgttggtagaatgaaatgaaagagtagcaatgcaatggtaggattccaaagtccaaaaggaatgttccgtcctttttctttcaaatattggatat |
26529436 |
T |
|
| Q |
101 |
nnnnng-tcctatttgattggaatggaaatagagagacacattatctgcattagcaataatgttgtgtacgttacaagaaaacattctaaaatgaaactc |
199 |
Q |
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| T |
26529435 |
tttttggtcctatttgtttggaatggaaatagaaagacacattatctgcattagcaataatgttgtgtacgttacaagaaaactttctaaaatgaaactc |
26529336 |
T |
|
| Q |
200 |
aaaatcatttgcactataatttgtttggaatggaaatagataaatacattatctgcatttgcactataaaatggttgcagccattgatgacaaaggttnn |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26529335 |
aaaatcatttgcactataatttgtttggaatggaaatagatagacacattatctgcatttgcactataaaatggttgcagccattgatgataaaggttaa |
26529236 |
T |
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| Q |
300 |
nnnnngaaagatgacgatgaagaaaagcaagatggtggaagcatgaaatagagaatatcaatttgataccatactaccatataaatatttggaataatga |
399 |
Q |
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| T |
26529235 |
aaaaagaaagatgacgatgaagaaaagcaagatggtggaagcatgaaatagagaatatcaatttgataccataccaccatataaatatttggaataatga |
26529136 |
T |
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| Q |
400 |
acaaacaaggttttgtttgacgtgcacaaataaaatgatattgcaccatgcataaatgtgtttttcattgttat |
473 |
Q |
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| T |
26529135 |
acaaacaaggttttgtttgacgtgcacaaataaaatgatattgcaccatgcataaatgtttttttcatcgttat |
26529062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 26528554 - 26528375
Alignment:
| Q |
15 |
aatgaaatgaaagagtagcaatgcaatggtaggattccgaagtccaaaagg-aatgttccgtcctttttctttcaaatattggannnnnnnngtcctatt |
113 |
Q |
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|||||||||| ||||||| ||| || | ||||||||| |||||||||||| ||| |||| |||||||||||||||||||| || |||| || |
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| T |
26528554 |
aatgaaatgatagagtagtaatcaaaagttaggattcccaagtccaaaaggaaatcttcc-tcctttttctttcaaatattagatttttta--tcctttt |
26528458 |
T |
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| Q |
114 |
tgattggaatggaaatagagagacacattatctgcattagcaataatgttgtgtacgttacaagaaaacattctaaaatgaaact |
198 |
Q |
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| T |
26528457 |
tatttggaatgggaatagaaagacac--tatctgcattaccaatttagttttgtacttgacaagataacattctgaaatgaaact |
26528375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 464
Target Start/End: Original strand, 29213015 - 29213073
Alignment:
| Q |
406 |
aaggttttgtttgacgtgcacaaataaaatgatattgcaccatgcataaatgtgttttt |
464 |
Q |
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| T |
29213015 |
aaggttttgtctaatgtgcacaactaaaatgatcttgcaccatgcacacatgtgttttt |
29213073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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