View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_28 (Length: 461)
Name: NF9183_low_28
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 6015450 - 6015877
Alignment:
| Q |
19 |
cacagaattgttgaagttagaaggttatgtgcctcatacagcaaatgtgcttgcagatatagaggaagaggaaaaggaacaagccctgtcttatcatagt |
118 |
Q |
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| T |
6015450 |
cacagaattgttgaagttagaaggttatgtgcctcatacagcaaatgtgcttgcagatatagaggaagaggaaaaggaacaagccctgtcttatcatagt |
6015549 |
T |
|
| Q |
119 |
gaaaaagttgcaattgcttttatgctcttgaatacagcaccagggactccaatcagggtcataaagaatttaagagtttgtgcggattgtcatatggcta |
218 |
Q |
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| T |
6015550 |
gaaaaagttgcaattgcttttatgctcttgaatacagcaccagggactccaatcagggtcataaagaatttaagagtttgtgccgattgtcatatggcta |
6015649 |
T |
|
| Q |
219 |
tcaaactcatatccaaggtttacgctagagagattgttatcagggatcgtagtcggttccaccattttagtggtggttcatgttcctgtaaagattactg |
318 |
Q |
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| T |
6015650 |
tcaaactcatatccaaggtttacgctagagagattattatcagggatcgtagtcggttccaccattttagtggtggttcatgttcctgtaaagattactg |
6015749 |
T |
|
| Q |
319 |
gtaatatgtaaaattatcatgatttgataacgacatcttgtgagtacaatgctatattgtttttgaggtaagatttggtgattagatataaagggagtga |
418 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6015750 |
gtaatatatagaattatcatgatttgataacgacatcttgtgagtacaatgctatattgtttttgaggtaagatttggtgattagatataaagggagtga |
6015849 |
T |
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| Q |
419 |
gacatggctgaagattttgctaacttct |
446 |
Q |
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| T |
6015850 |
gacatggctgaagattttgctaacttct |
6015877 |
T |
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