View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_30 (Length: 449)

Name: NF9183_low_30
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_30
NF9183_low_30
[»] chr3 (1 HSPs)
chr3 (15-429)||(1174811-1175225)
[»] chr2 (1 HSPs)
chr2 (112-158)||(10150675-10150721)
[»] chr8 (2 HSPs)
chr8 (217-262)||(38719310-38719355)
chr8 (112-156)||(1433467-1433511)
[»] chr5 (2 HSPs)
chr5 (117-155)||(912758-912796)
chr5 (117-154)||(6739796-6739833)
[»] chr1 (1 HSPs)
chr1 (215-257)||(30258860-30258902)
[»] chr4 (2 HSPs)
chr4 (118-155)||(27321941-27321978)
chr4 (112-156)||(11808191-11808235)
[»] chr7 (1 HSPs)
chr7 (111-155)||(1431411-1431455)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 1174811 - 1175225
Alignment:
Q  15 agatccatccaacctgaaggacgaaaaagaattttatatagtcgaacaagtgttttaagatcttacgaaaacaacatatgacgtgtctataacttgtttt 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1174811 agatccatccaacctgaacgacgaaaaagaattttatatagtcgaaaaagtgttttaagatcttacgaaaacaacatatgatgtgtctataacttgtttt 1174910  T
Q  115 tattatagaaataacttatacctaaacgcttatatgataagtgcgtagaaattaagctgtttatcaaacaagacttagaatagaaaagtaatggaaacaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1174911 tattatagaaataacttatacctaaacgcttatatgataagtgcgtagaaattaagctgtttatcaaacaagacttagaatagaaaagtaatggaaacaa 1175010  T
Q  215 attatttacctcttttccccattctgttttctcttcatagccacaactaatgacatgtattgcttctgtaagttgagaagcaatcccaccttgctctagt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  1175011 attatttacctcttttccccattctgttttctcttcatagccacaactaatgacatgtattgcttctgtaagttgagaagcaatcccaccatgctttagt 1175110  T
Q  315 gtctcaccatcaaccaattgagtagatgcaatgaaaattggagattctccaaatttcttgactaacttttgacttgagattatagacaagccatcttcat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1175111 gtctcaccatcaaccaattgagtagatgcaatgaaaattggagattctccaaatttcttgactaacttttgacttgagattatagacaagccatcttcat 1175210  T
Q  415 cttcatttcctacat 429  Q
     ||||||||||||||    
T  1175211 tttcatttcctacat 1175225  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 10150721 - 10150675
Alignment:
Q  112 ttttattatagaaataacttatacctaaacgcttatatgataagtgc 158  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  10150721 ttttattatagaaataacttatacataaacacttatataataagtgc 10150675  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 38719310 - 38719355
Alignment:
Q  217 tatttacctcttttccccattctgttttctcttcatagccacaact 262  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||    
T  38719310 tatttacctcttttccccattcggttttgtcttcataaccacaact 38719355  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 1433511 - 1433467
Alignment:
Q  112 ttttattatagaaataacttatacctaaacgcttatatgataagt 156  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||    
T  1433511 ttttattatagaaataacttatacataaccacttatatgataagt 1433467  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 912758 - 912796
Alignment:
Q  117 ttatagaaataacttatacctaaacgcttatatgataag 155  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  912758 ttatagaaataacttattcataaacgcttatatgataag 912796  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 6739833 - 6739796
Alignment:
Q  117 ttatagaaataacttatacctaaacgcttatatgataa 154  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  6739833 ttatagaaatgacttatacataaacgcttatatgataa 6739796  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 30258902 - 30258860
Alignment:
Q  215 attatttacctcttttccccattctgttttctcttcatagcca 257  Q
    |||| |||||||||| |||||||| ||||||||||||||||||    
T  30258902 attaattacctctttgccccattcagttttctcttcatagcca 30258860  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 27321941 - 27321978
Alignment:
Q  118 tatagaaataacttatacctaaacgcttatatgataag 155  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  27321941 tatagaaataacttatacataaacacttatatgataag 27321978  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 11808235 - 11808191
Alignment:
Q  112 ttttattatagaaataacttatacctaaacgcttatatgataagt 156  Q
    |||||| |||||||| |||||||| |||| |||||||||||||||    
T  11808235 ttttatcatagaaattacttatacataaatgcttatatgataagt 11808191  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 1431411 - 1431455
Alignment:
Q  111 tttttattatagaaataacttatacctaaacgcttatatgataag 155  Q
    |||| ||||| |||||||||||||| ||||| |||||||||||||    
T  1431411 ttttcattatggaaataacttatacataaacacttatatgataag 1431455  T

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