View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_31 (Length: 428)
Name: NF9183_low_31
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 41738725 - 41739142
Alignment:
| Q |
1 |
aaaaaggcttaaagcatccatgtaagcaactttaaagacagttagtgacggatgagatagtcacctggaacatatttctcgctccaactacagctccatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41738725 |
aaaaaggcttaaagcatccatgtaagcaactttaaagacagttagtgacggatgagatagtcacctggaacatatttctcgctccaactacagctccatt |
41738824 |
T |
|
| Q |
101 |
cacaaaacgtgtgttatcacgagtgatattcgcttgtaaaaatgccatgtgatcaatgccagtaccaccgaggctggtgggaggtccatctgcactaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41738825 |
cacaaaacgtgtgttatcacgagtgatattcgcttgtaaaaatgccatgtgatcaatgccagtaccaccgaggctggtgggaggtccatctgcactaatt |
41738924 |
T |
|
| Q |
201 |
ccaccaccaggtagtactctttgaccatttgcacagatttgattaccttcgtcacgagttgttatctcttccattacaagtccataagtgaatttactct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41738925 |
ccaccaccaggtagtactctttgaccatttgcacagatttgattaccttcgtcgcgagttgttatctcttccattacaagtccataagtgaatttactct |
41739024 |
T |
|
| Q |
301 |
gtggcgtgaaattctgcttggcacacaacaagaaaatgacgataaaaaatcactaccattagcctaaatagttcaagtaaaaataaagaaaaacaagtaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
41739025 |
gtggcgtgaaattctgcttggcacacaacaagaaaatgaagataaaaaatcactaccattagcctaaatagttcatgtaaaaataaagaacaacaagtaa |
41739124 |
T |
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| Q |
401 |
cttgcctctgtagtatta |
418 |
Q |
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|||||||||||| ||||| |
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| T |
41739125 |
cttgcctctgtaatatta |
41739142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41738691 - 41738719
Alignment:
| Q |
1 |
aaaaaggcttaaagcatccatgtaagcaa |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
41738691 |
aaaaaggcttaaagcatccatgtaagcaa |
41738719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 56 - 301
Target Start/End: Original strand, 24169784 - 24170029
Alignment:
| Q |
56 |
gatagtcacctggaacatatttctcgctccaactacagctccattcacaaaacgtgtgttatcacgagtgatattcgcttgtaaaaatgccatgtgatca |
155 |
Q |
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|||||||||||||||||| || || |||||||| |||||| |||||||| | ||||||||| | || ||||| || |||||||||||||| | |||| |
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| T |
24169784 |
gatagtcacctggaacatgttcctgcttccaactatagctccgttcacaaaccttgtgttatcccttgtaatattagcctgtaaaaatgccatcttatca |
24169883 |
T |
|
| Q |
156 |
atgccagtaccaccgaggctggtgggaggtccatctgcactaattccaccaccaggtagtactctttgaccatttgcacagatttgattaccttcgtcac |
255 |
Q |
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|| |||||||||| |||| | || ||||||||||||||||||||||| ||| ||| | ||||||||||||||| | |||||| ||||| ||| |||| |
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| T |
24169884 |
ataccagtaccactgagggttgttggaggtccatctgcactaattcctccattaggcaatactctttgaccattggaacagatatgattggtttcatcac |
24169983 |
T |
|
| Q |
256 |
gagttgttatctcttccattacaagtccataagtgaatttactctg |
301 |
Q |
| |
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| ||| |||||||||||||||| | ||||||||||||||||||||| |
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| T |
24169984 |
gtgttattatctcttccattactaatccataagtgaatttactctg |
24170029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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