View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9183_low_4 (Length: 803)
Name: NF9183_low_4
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 722; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 18 - 787
Target Start/End: Original strand, 13854986 - 13855755
Alignment:
| Q |
18 |
aatgtcacaaacagagccaattcgtttcggcattctcggttgcgcggacatagcccgcaaactctcacgcaccattctcctctcttccaccgccacaatc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13854986 |
aatgtcacaaacagagccaattcgtttcggcattctcggttgcgcggacatagcccgcaaactctcacgcaccattctcctctcttccaccgccacaatc |
13855085 |
T |
|
| Q |
118 |
tccgccgtcggcagccgcactctctccaaagcaaccaccttcgcaaaactcaacaacttccctcccaccgccaaaatctacggctcatacgaagaagttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
13855086 |
tccgccgtcggcagccgcactctctccaaagcaaccaccttcgcaaaactcaacaacttccgtcccaccgccaaagtctacggctcttacgaagaagttc |
13855185 |
T |
|
| Q |
218 |
ttgacgaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13855186 |
ttgacgaccctaatgttgacgctgtttacttgccgttaccgacgacgttacatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgtgttgct |
13855285 |
T |
|
| Q |
318 |
tgagaaaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13855286 |
tgagaaaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcat |
13855385 |
T |
|
| Q |
418 |
catccgagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttgataatgttgat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13855386 |
catccgagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgttttgttttgataatgttgat |
13855485 |
T |
|
| Q |
518 |
gtatgaattactgacatgacacgataaggacactgacacgtagttatcgaggataattttaagtatacctatgaagaacggatatagacacccgttacca |
617 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
13855486 |
gtatgaattactgacatgacacgatagggacactgacacgtagttatcgaggataattttaagtatacctatgaagaacggatatagacacccgttacta |
13855585 |
T |
|
| Q |
618 |
aacacgacatggaaactgacacatcgacactactaataatttgagaaaatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgta |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13855586 |
aacacgacatggaaactgacacatcgacactactaataatttgagaaaatgtaattatatgtgtcgatgtccgacacacctaacccgaggagtgttcgta |
13855685 |
T |
|
| Q |
718 |
cttcattgttacttaactataagctagatccaaaatttagaaccaaaacagaaagttatgctattgatgt |
787 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
13855686 |
cttcatagttacttaactataagctagatccaaaatttagaaccaaaacagaaagttatgccattgatgt |
13855755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Original strand, 13849196 - 13849706
Alignment:
| Q |
18 |
aatgtcacaaacagagccaattcgtttcggcattctcggttgcgcggacatagcccgcaaactctcacgcaccattctcctctcttccaccgccacaatc |
117 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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|
| T |
13849196 |
aatgtcacaaactgaaccaatccgtttcggcattctcggttgcgccgacatagcccgcaaactctcacgcgccattctcctctcttccaccgccaccatc |
13849295 |
T |
|
| Q |
118 |
tccgccgtcggcagccgcactctctccaaagcaaccaccttcgcaaaactcaacaacttccctcccaccgccaaaatctacggctcatacgaagaagttc |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
13849296 |
tctgccgtcggcagccgcactctctccaaagcaaccaccttcgcaaaactcaacaacttccctcccaccgccaaaatctacggctcctatgaagaagttc |
13849395 |
T |
|
| Q |
218 |
ttgacgaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgct |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| || | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |
|
|
| T |
13849396 |
ttgatgaccctaatgttgacgctgtttacgtgccgttgccgactacgttgcatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgttttgtt |
13849495 |
T |
|
| Q |
318 |
tgagaaaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcat |
417 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13849496 |
agagaagccggtggctgtgagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcat |
13849595 |
T |
|
| Q |
418 |
catccgagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtctgtgtttt-gttttgataatgttga |
516 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
13849596 |
catcctagaacagaggtgatgaaggggtttttggaggatggagagaagtttggcaaggttaaatcggtatgtgtttgtgttttggttttgataatgttga |
13849695 |
T |
|
| Q |
517 |
tgtatgaatta |
527 |
Q |
| |
|
||||||||||| |
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|
| T |
13849696 |
tgtatgaatta |
13849706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 667 - 787
Target Start/End: Original strand, 13851773 - 13851893
Alignment:
| Q |
667 |
tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcattgttacttaactataagctagatccaaaatttagaaccaaaac |
766 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||| ||||| ||| | |||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
13851773 |
tgtaattatatgtgtcgatgtctgacacgcctaacctgaggaatgtctatgcttcatagttacttaactataagctagatccaaaattaagaaccaaaac |
13851872 |
T |
|
| Q |
767 |
agaaagttatgctattgatgt |
787 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
13851873 |
agaaagttatgcctttgatgt |
13851893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 668
Target Start/End: Original strand, 33303630 - 33303684
Alignment:
| Q |
614 |
accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaatg |
668 |
Q |
| |
|
|||| |||||| | ||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33303630 |
accagacacgatacggacactgacacatcgacactaataataatttgaaaaaatg |
33303684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 614 - 667
Target Start/End: Original strand, 34298407 - 34298460
Alignment:
| Q |
614 |
accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat |
667 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
34298407 |
accagacacgacacggaaactgacacaccgacaccactaataatttgagaaaat |
34298460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 723
Target Start/End: Original strand, 34897122 - 34897178
Alignment:
| Q |
667 |
tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcat |
723 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| |||||||||| ||| |||||| |
|
|
| T |
34897122 |
tgtaattatatgtgtcgatgtcggacacatgtaattcgaggagtgtccgtgcttcat |
34897178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 716
Target Start/End: Original strand, 38143258 - 38143309
Alignment:
| Q |
665 |
aatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgt |
716 |
Q |
| |
|
||||||||||||||||| | |||| ||||||| ||| ||||||||||||||| |
|
|
| T |
38143258 |
aatgtaattatatgtgttggtgtcagacacacctaatccgaggagtgttcgt |
38143309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 927909 - 927871
Alignment:
| Q |
630 |
aaactgacacatcgacactactaataatttgagaaaatg |
668 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
927909 |
aaactgacacgtcgacactaataataatttgagaaaatg |
927871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 667
Target Start/End: Complemental strand, 22423896 - 22423847
Alignment:
| Q |
618 |
aacacgacatggaaactgacacatcgacactactaataatttgagaaaat |
667 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
22423896 |
aacacgacacggatactgacaccctgacactactaataatttgagaaaat |
22423847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 667
Target Start/End: Complemental strand, 43061745 - 43061708
Alignment:
| Q |
630 |
aaactgacacatcgacactactaataatttgagaaaat |
667 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
43061745 |
aaactgaaacatcgacactagtaataatttgagaaaat |
43061708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 667
Target Start/End: Complemental strand, 12674589 - 12674536
Alignment:
| Q |
614 |
accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat |
667 |
Q |
| |
|
|||| |||||||| ||| | ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
12674589 |
accagacacgacacggacattgacacaccgacactgctaataatttgagaaaat |
12674536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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