View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_44 (Length: 373)
Name: NF9183_low_44
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 43099082 - 43098742
Alignment:
| Q |
14 |
gagatcaaagtgatcatttacccaaatatatttcttgttaaaaaactgcatttgtacagtatacttttatagaaatgcatgttcaactatatactaatgt |
113 |
Q |
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| T |
43099082 |
gagattaaagtgatcatttacccaaatatatttcttgttaaaaaactgcatttgtacagtatacttttatagaaatgcatgttcaactata--ctaatgt |
43098985 |
T |
|
| Q |
114 |
aagtgtcatcaaatggtgagctagacctgacatacaagttttagacagtagtactatatgattttgcattttgcaagctgctgttagtctgttacatgtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43098984 |
aagtgtcatcaaatggtgagctagacctgacatacaagttttagacggtagtactatatgattttgcattttgcaagcagctgttagtctgttacatgtt |
43098885 |
T |
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| Q |
214 |
ctagttttcgaactttattaaatgctgaccaaacttgtctcttttgcctgacattgttacagctagtttaacatgcatgggttaatttatccctaaacca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43098884 |
ctagttttcgaactttattaaatgctgaccaaacttgtctcttttgcctgacattgttacagctagtttaacatgcatgggttaatttatccctaaacca |
43098785 |
T |
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| Q |
314 |
aatacaaagaaacgaatcagtgtcctctgtagtaacttttgta |
356 |
Q |
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| T |
43098784 |
aatacaaagaaacgaatcagtgtcctctgtagtaacttttgta |
43098742 |
T |
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