View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_47 (Length: 346)
Name: NF9183_low_47
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_47 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 17582010 - 17581668
Alignment:
| Q |
9 |
atggacatcagttaagagtcctccatttgtggcgctacagccgcaattctcaaaccgcacttaagggcatatatgacatcaaattagggtgagtttgatc |
108 |
Q |
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| T |
17582010 |
atgggcatgagttaagagtcctacatttgtggcgctacagccgcacttctcaaaccgcacttaagggcatatatgacatcaaattagggtgagtttgagc |
17581911 |
T |
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| Q |
109 |
tgctaaaatnnnnnnnngggagtggacaatataactccaattgtacaatgtttgatcttaaaactatatctaggaatggaaaaattaggggggcaaggga |
208 |
Q |
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| T |
17581910 |
tgctaaaataaaaataagggagtggacaatataactccaattgtacaatgtttgatcttaaaactatatctaggactggaaaaattaggggggcaaggga |
17581811 |
T |
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| Q |
209 |
ccggccaaaaactgaaattctagttctcactgaaccacaacacaactcttttatcttgagt-----ttgtctaaaataccaaaataactttgtgtacacc |
303 |
Q |
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| T |
17581810 |
ccggccaaaatctgaaattctagttctcactgaaccacaacacaactcttttatctcgagtataagttatctaaaataccaaaataactttgtctacacc |
17581711 |
T |
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| Q |
304 |
aaacatgacaaaaagttgtgcaatacctcaaaataaaaagttt |
346 |
Q |
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| T |
17581710 |
aaacatgacaaaaagttgtgcaatacctcaaaataaaaagttt |
17581668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 166 - 330
Target Start/End: Complemental strand, 17588538 - 17588372
Alignment:
| Q |
166 |
ttaaaactatatctaggaatggaaaaattaggggggcaagggaccggccaaaaactgaaattctagttctcactgaaccacaacacaactcttt---tat |
262 |
Q |
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| T |
17588538 |
ttaaaactatttctgggactgggaaaattagggat-caagggaccgaccaaaaactgaaattctagtcctcattaaaccatgacacaactctttgtttaa |
17588440 |
T |
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| Q |
263 |
cttgagtttgtctaaaataccaaaataactttgtgtacaccaaacatgacaaaaagttgtgcaatacc |
330 |
Q |
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| T |
17588439 |
gtataagttgtttaaaataccaaaataacttttcgtacacaaaacatgacaaaaaattgtgcaatacc |
17588372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 17589870 - 17589817
Alignment:
| Q |
64 |
cgcacttaagggcatatatgacatcaaattagggtgagtttgatctgctaaaat |
117 |
Q |
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| T |
17589870 |
cgcacttaagggcatatatgacaacaaattagggttagtttgatctgctaaaat |
17589817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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