View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_49 (Length: 341)
Name: NF9183_low_49
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 6153517 - 6153828
Alignment:
| Q |
14 |
gagagaggaggaaatctcagagtctatccagaaagaaacttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6153517 |
gagagaggaggaaatctcagagtctatccagaaagaaacttaccagcctaacattaaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtg |
6153616 |
T |
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| Q |
114 |
aagtcaactacatgtttcattcatttattgagtttaatcaacatattaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6153617 |
aagtcaactacatgtttcattcatttattgagtttaatcaacatattaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgt |
6153716 |
T |
|
| Q |
214 |
ttattaggaagattatattgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6153717 |
ttattaggaagattatattgatggggagcgtattggaagacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtc |
6153816 |
T |
|
| Q |
314 |
aagaatgtttgt |
325 |
Q |
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|||||||||||| |
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| T |
6153817 |
aagaatgtttgt |
6153828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 159 - 325
Target Start/End: Complemental strand, 33800655 - 33800495
Alignment:
| Q |
159 |
ttaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagacttga |
258 |
Q |
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| T |
33800655 |
ttaaaatcctaatacttgagcatattcaagtgtcataacccctcttgttttatgtttattaggaagattttattgatggggagtgtattgggagacttga |
33800556 |
T |
|
| Q |
259 |
ttgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgt |
325 |
Q |
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||| | |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
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| T |
33800555 |
ttg------caatcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgt |
33800495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 159 - 325
Target Start/End: Complemental strand, 33729538 - 33729378
Alignment:
| Q |
159 |
ttaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagacttga |
258 |
Q |
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||||||||||||||| || |||||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |
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| T |
33729538 |
ttaaaatcctaatacttgagcatattcaagtgtcataacccctcttgttttatgtttattaggaagattttattgatggggagtgtattgggagatttga |
33729439 |
T |
|
| Q |
259 |
ttgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgt |
325 |
Q |
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||| | |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
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| T |
33729438 |
ttg------caatcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgt |
33729378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 6128226 - 6128390
Alignment:
| Q |
156 |
atattaaaatcctaatacatgcgcatattcaaatctcataaccc-ctattattttatgtttattaggaagattatattgatggggagcgtattggaagac |
254 |
Q |
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||||||||||||||||||||| |||||||||| | ||||||||| | ||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6128226 |
atattaaaatcctaatacatgagcatattcaagtatcataaccctcaatttttttttgtttattaggaagattatattgatggggagcatattggaagac |
6128325 |
T |
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| Q |
255 |
ttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgt |
325 |
Q |
| |
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|| | || ||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| |||| |
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| T |
6128326 |
ttcactg----cac--tcacatatatcatcttgattgcatcaaacaatggtttgaggtgaagaatgcttgt |
6128390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 6147422 - 6147585
Alignment:
| Q |
156 |
atattaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagact |
255 |
Q |
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||||||||||||||||||||| |||||||||| | ||||||||| | | |||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6147422 |
atattaaaatcctaatacatgagcatattcaagtatcataaccctcaattttttttgtttattaggaagattatattgatggggagcatattggaagact |
6147521 |
T |
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| Q |
256 |
tgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgt |
325 |
Q |
| |
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| |||||| ||||| ||||||| |||| |||||| |||||||||| |||||||||||||||| |
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| T |
6147522 |
taattgta------ctcacacatatcattttgattgcatcgaacaatggttgggggtgaagaatgtttgt |
6147585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 6147038 - 6147129
Alignment:
| Q |
49 |
aaacttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcattta |
140 |
Q |
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|
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6147038 |
aaacataccggcctaatattgaggaaacaagcacaatgaatcaaatatgcaccatatgtcaggtgaggtcaactacatgtttcattcattta |
6147129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 33801140 - 33801062
Alignment:
| Q |
38 |
tatccagaaagaaacttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
116 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33801140 |
tatccagcaagaaacttaccagcctaatactgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
33801062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 33730023 - 33729946
Alignment:
| Q |
39 |
atccagaaagaaacttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
116 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33730023 |
atccagcaagaaacttaccagcctaatactgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
33729946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 6127867 - 6127943
Alignment:
| Q |
63 |
aatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcattt |
139 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6127867 |
aatactgaggaaacaagcacaatgaatcaaacatgcaccatatgtcaggtgaggtcaactacatgtttcattcattt |
6127943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 6140369 - 6140440
Alignment:
| Q |
67 |
ttgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcatt |
138 |
Q |
| |
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||||||||||||| || ||||||||| || |||||||| ||||||| | ||||||||||||||||||||| |
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| T |
6140369 |
ttgaggaaacaagtactcagaatcaaacatgtaccatatgccaggtgaggccaactacatgtttcattcatt |
6140440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 6121040 - 6121090
Alignment:
| Q |
275 |
atatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgt |
325 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||| |||||||||| |
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| T |
6121040 |
atatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgt |
6121090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 9886570 - 9886611
Alignment:
| Q |
280 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgt |
321 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| |
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| T |
9886570 |
tcatcttgactgcatcaaacaatggttggagttgaagaatgt |
9886611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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