View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_50 (Length: 334)

Name: NF9183_low_50
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_50
NF9183_low_50
[»] chr1 (25 HSPs)
chr1 (5-321)||(36447460-36447776)
chr1 (36-152)||(13344830-13344946)
chr1 (40-147)||(4347035-4347142)
chr1 (40-149)||(40352452-40352561)
chr1 (38-150)||(26058300-26058413)
chr1 (13-93)||(31957938-31958018)
chr1 (69-151)||(30557624-30557706)
chr1 (40-150)||(35569156-35569267)
chr1 (38-119)||(27801637-27801719)
chr1 (81-149)||(42027-42096)
chr1 (40-144)||(20800237-20800342)
chr1 (40-149)||(43541577-43541686)
chr1 (69-144)||(7826314-7826390)
chr1 (219-295)||(30637127-30637203)
chr1 (101-144)||(5167385-5167428)
chr1 (11-149)||(47981751-47981890)
chr1 (43-144)||(5410703-5410805)
chr1 (40-144)||(25061287-25061392)
chr1 (40-105)||(45660533-45660597)
chr1 (40-144)||(48510969-48511074)
chr1 (69-144)||(11023290-11023366)
chr1 (44-144)||(29438648-29438748)
chr1 (16-150)||(29441220-29441356)
chr1 (79-119)||(32369944-32369984)
chr1 (40-123)||(40229451-40229535)
[»] chr8 (22 HSPs)
chr8 (5-144)||(35550231-35550370)
chr8 (40-143)||(36779436-36779539)
chr8 (40-149)||(29970847-29970956)
chr8 (42-138)||(38715175-38715271)
chr8 (81-144)||(41408276-41408339)
chr8 (81-147)||(41891776-41891842)
chr8 (40-144)||(31246274-31246379)
chr8 (40-120)||(1836124-1836204)
chr8 (102-153)||(45147215-45147266)
chr8 (40-144)||(3619028-3619132)
chr8 (66-143)||(20169490-20169567)
chr8 (40-151)||(28425424-28425536)
chr8 (94-149)||(2071537-2071592)
chr8 (44-119)||(10368062-10368137)
chr8 (70-121)||(18355760-18355811)
chr8 (40-150)||(22936746-22936857)
chr8 (16-144)||(3465399-3465529)
chr8 (86-144)||(14520241-14520299)
chr8 (69-119)||(15677739-15677789)
chr8 (69-144)||(24297551-24297627)
chr8 (83-119)||(24776480-24776516)
chr8 (40-104)||(33588765-33588829)
[»] chr4 (23 HSPs)
chr4 (5-91)||(20677036-20677122)
chr4 (46-122)||(5835778-5835854)
chr4 (40-144)||(5025551-5025655)
chr4 (40-144)||(40286304-40286408)
chr4 (104-147)||(38305207-38305250)
chr4 (38-144)||(48550237-48550344)
chr4 (106-144)||(2175136-2175174)
chr4 (43-144)||(54488630-54488732)
chr4 (42-146)||(28947706-28947811)
chr4 (71-143)||(20232036-20232108)
chr4 (45-152)||(22694548-22694656)
chr4 (85-121)||(39000530-39000566)
chr4 (80-119)||(1616522-1616561)
chr4 (40-119)||(38740287-38740366)
chr4 (40-90)||(36150626-36150676)
chr4 (44-144)||(26651807-26651908)
chr4 (69-149)||(28987069-28987150)
chr4 (40-144)||(38306033-38306138)
chr4 (94-147)||(46958085-46958138)
chr4 (40-93)||(54487231-54487284)
chr4 (66-122)||(2052053-2052109)
chr4 (80-151)||(14564098-14564170)
chr4 (48-112)||(30889878-30889942)
[»] chr5 (11 HSPs)
chr5 (5-90)||(37036719-37036804)
chr5 (39-121)||(2868333-2868415)
chr5 (38-150)||(3747541-3747653)
chr5 (39-119)||(19784863-19784944)
chr5 (40-144)||(22482240-22482345)
chr5 (16-149)||(35847841-35847976)
chr5 (40-149)||(2483665-2483775)
chr5 (40-94)||(22811077-22811131)
chr5 (70-130)||(7385902-7385963)
chr5 (40-152)||(8048999-8049112)
chr5 (40-148)||(43152316-43152424)
[»] chr6 (11 HSPs)
chr6 (41-144)||(3605711-3605814)
chr6 (5-150)||(8551046-8551192)
chr6 (40-120)||(957536-957615)
chr6 (43-121)||(1499996-1500074)
chr6 (40-150)||(4911001-4911111)
chr6 (40-115)||(5456032-5456107)
chr6 (40-150)||(5584002-5584112)
chr6 (16-144)||(15151464-15151594)
chr6 (69-144)||(1312398-1312474)
chr6 (94-150)||(26274580-26274636)
chr6 (69-144)||(33898964-33899040)
[»] chr3 (22 HSPs)
chr3 (40-146)||(25181247-25181353)
chr3 (40-144)||(44225602-44225706)
chr3 (94-152)||(29252091-29252149)
chr3 (40-144)||(49526628-49526733)
chr3 (81-121)||(53078436-53078476)
chr3 (16-151)||(52813227-52813364)
chr3 (40-145)||(53567969-53568074)
chr3 (43-119)||(4486852-4486928)
chr3 (5-91)||(29252138-29252221)
chr3 (5-92)||(30301201-30301289)
chr3 (40-141)||(42644299-42644401)
chr3 (40-104)||(7012677-7012742)
chr3 (40-144)||(34561145-34561250)
chr3 (42-119)||(35264324-35264401)
chr3 (40-120)||(52736801-52736881)
chr3 (40-119)||(31766160-31766239)
chr3 (80-143)||(41115251-41115314)
chr3 (82-124)||(49633994-49634036)
chr3 (40-144)||(10853226-10853331)
chr3 (40-151)||(50664795-50664907)
chr3 (69-144)||(52966768-52966844)
chr3 (69-144)||(53074968-53075044)
[»] chr7 (19 HSPs)
chr7 (38-144)||(47217487-47217594)
chr7 (40-150)||(42752131-42752242)
chr7 (38-119)||(32186996-32187078)
chr7 (43-149)||(33936762-33936868)
chr7 (43-143)||(16353488-16353589)
chr7 (40-141)||(40491671-40491772)
chr7 (40-143)||(2839349-2839452)
chr7 (40-119)||(4228605-4228684)
chr7 (40-150)||(39634105-39634216)
chr7 (38-144)||(41715713-41715820)
chr7 (42-151)||(20088929-20089039)
chr7 (81-143)||(32683702-32683764)
chr7 (94-147)||(38494314-38494367)
chr7 (66-143)||(44391200-44391277)
chr7 (41-144)||(37639489-37639593)
chr7 (73-149)||(43186537-43186613)
chr7 (40-144)||(39391083-39391188)
chr7 (69-144)||(19097484-19097560)
chr7 (71-143)||(31625560-31625632)
[»] chr2 (23 HSPs)
chr2 (40-119)||(26806238-26806317)
chr2 (34-144)||(12110914-12111024)
chr2 (40-149)||(3853946-3854056)
chr2 (69-154)||(5055244-5055329)
chr2 (80-144)||(3602417-3602482)
chr2 (40-147)||(18511148-18511256)
chr2 (44-147)||(1763270-1763373)
chr2 (40-144)||(25747839-25747943)
chr2 (40-144)||(34433263-34433368)
chr2 (69-144)||(5916199-5916275)
chr2 (69-121)||(11759770-11759822)
chr2 (81-121)||(13238936-13238976)
chr2 (69-144)||(36312351-36312427)
chr2 (69-144)||(36548274-36548350)
chr2 (71-121)||(8800607-8800657)
chr2 (40-94)||(23359938-23359992)
chr2 (38-92)||(43436291-43436345)
chr2 (40-144)||(1944996-1945101)
chr2 (40-117)||(7741061-7741138)
chr2 (101-150)||(27911499-27911548)
chr2 (82-155)||(31453515-31453588)
chr2 (40-119)||(16467132-16467212)
chr2 (85-121)||(17220447-17220483)
[»] scaffold0172 (1 HSPs)
scaffold0172 (34-144)||(15217-15327)
[»] scaffold0184 (1 HSPs)
scaffold0184 (81-149)||(7358-7426)
[»] scaffold0005 (1 HSPs)
scaffold0005 (80-151)||(253205-253277)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 321
Target Start/End: Complemental strand, 36447776 - 36447460
Alignment:
Q  5 aacatcttttatataaatcacttctactatgaagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaatt 104  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36447776 aacatcttttatataaatcacttctactatgaagcattccaacataaatcactttactcttaactcacttttgatcaaaatcaattctacaaaattaatt 36447677  T
Q  105 caatcaaaatcaattttcaccgccgcagaaccaaacacacgctaagtcaaggatttaaaacaaactaaactctcattctttctattattagttgtcttct 204  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  36447676 caatcaaaatcaattttcaccgccacagaaccaaacacacgctaagtcaaggatttaaaacaaact-aactctcattctttctattattagttttcttct 36447578  T
Q  205 tagacgtgcgagctccttagccaaagcttgacacaacaacttgaacaaacttcttaaccccaaacaatctccaacaacttgaacttatattccaccttgc 304  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36447577 tagacgagcgagctccttagccaaagcttgacacaacaacttgaacaaacttcttaaccccaaacaatctccaacaacttgaacttatattccaccttgc 36447478  T
Q  305 tc-aactgttattctctg 321  Q
    || |||||||||| ||||    
T  36447477 tcaaactgttattttctg 36447460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 13344830 - 13344946
Alignment:
Q  36 aagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaac 135  Q
    ||||| ||||||||||||||||||||  | || |||||||| | |||||||||||||||||||| ||||||||||||||||||| ||  | ||||  |||    
T  13344830 aagcaaccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaattatcttcaccgcccaac 13344929  T
Q  136 caaacacacgctaagtc 152  Q
    |||||||||||||||||    
T  13344930 caaacacacgctaagtc 13344946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 4347035 - 4347142
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    ||||||||||||||||||||||  | || |||||||| | |||||||||||||||||||| ||||| | |||||||||||||  || ||||| |||||||    
T  4347035 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattctaccaaaatcaattttttccaccgcacaaccaaa 4347134  T
Q  140 cacacgct 147  Q
    ||||||||    
T  4347135 cacacgct 4347142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 40352452 - 40352561
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    ||||||||||||||||||||||  | || |||||||| | |||||||||||| ||||||| ||||| ||||||||||||| ||  | ||||| |||||||    
T  40352452 atccaaacataaatcactttacattaaactcacttttaaccaaaatcaattccacaaaatcaattctatcaaaatcaattctcctcaccgcacaaccaaa 40352551  T
Q  140 cacacgctaa 149  Q
    ||||| ||||    
T  40352552 cacacactaa 40352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 26058300 - 26058413
Alignment:
Q  38 gcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaattttcaccgccgcagaacc 136  Q
    |||||||||||||||||| |||||   |||||||||||| |||||||||||||||   ||||| ||||| ||||||||||||| || || ||||   |||    
T  26058300 gcatccaaacataaatcaatttacatctaattcacttttaatcaaaatcaattctcttaaaatcaattctatcaaaatcaattctcgccaccgccatacc 26058399  T
Q  137 aaacacacgctaag 150  Q
    |||||||| |||||    
T  26058400 aaacacacactaag 26058413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 31958018 - 31957938
Alignment:
Q  13 ttatataaatcacttctactatgaagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta 93  Q
    ||||||||| ||||||||| || ||| ||| |||||||||||||||||  ||| ||| |||||| ||||||||||||||||    
T  31958018 ttatataaaccacttctaccataaagtatctaaacataaatcactttaaactttatttacttttaatcaaaatcaattcta 31957938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 30557624 - 30557706
Alignment:
Q  69 tcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaagt 151  Q
    |||||||| | |||||||||||||||| ||| ||||| ||||||||||||| ||  | ||||| ||| |||||||||||||||    
T  30557624 tcacttttaaccaaaatcaattctacagaatcaattctatcaaaatcaattctcctcaccgcacaactaaacacacgctaagt 30557706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 35569267 - 35569156
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| | |||||||||||||  |||||| ||||| ||||||||||||| || |||||||   |||||    
T  35569267 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattctatcaaaatcaattctccccgccgccataccaa 35569168  T
Q  139 acacacgctaag 150  Q
    |||||| |||||    
T  35569167 acacacactaag 35569156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 27801719 - 27801637
Alignment:
Q  38 gcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||||||||||| |||||   ||| |||||||| |||||||||||||||   ||||| ||||| |||||||||||||    
T  27801719 gcatccaaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattctatcaaaatcaatt 27801637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 42027 - 42096
Alignment:
Q  81 aaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaa 149  Q
    ||||||||||||| |||||| ||||  |||||||||||||||| || |||||||| ||||||||| ||||    
T  42027 aaaatcaattctaacaaaatcaattttatcaaaatcaattttctccaccgcagaatcaaacacacactaa 42096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 20800342 - 20800237
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| | |||||||||||||  |||||| ||||| ||||||||||||| || |||||||   |||||    
T  20800342 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattctatcaaaatcaattctccccgccgccataccaa 20800243  T
Q  139 acacac 144  Q
    ||||||    
T  20800242 acacac 20800237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 43541686 - 43541577
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    ||||||||||||||||||| | | | || ||||||||||||| ||  |||| |||| ||| |||||| ||| ||||||||||   | ||||| |||||||    
T  43541686 atccaaacataaatcacttcattttcaactcacttttgatcagaacgaattttacagaatcaattcattcagaatcaatttttgtcaccgcataaccaaa 43541587  T
Q  140 cacacgctaa 149  Q
    ||||| ||||    
T  43541586 cacacactaa 43541577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 7826390 - 7826314
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| | |||||||||||||  |||||| ||||| |||||||||||||||| || ||||  ||||||||||||    
T  7826390 tcacttttaaccaaaatcaattctctcaaaatcaattctatcaaaatcaattttctccaccgccaaaccaaacacac 7826314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 30637203 - 30637127
Alignment:
Q  219 ccttagccaaagcttgacacaacaacttgaacaaacttcttaaccccaaacaatctccaacaacttgaacttatatt 295  Q
    ||||| |||||  |||| |||||||||||||||||||||| |||| | | ||||| | |||||||||||| ||||||    
T  30637203 ccttacccaaattttgaaacaacaacttgaacaaacttctaaaccacgagcaatcactaacaacttgaacctatatt 30637127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 5167385 - 5167428
Alignment:
Q  101 aattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||| |||||||||||||||| | ||||||||||||||||||    
T  5167385 aattcattcaaaatcaattttcatcaccgcagaaccaaacacac 5167428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 47981890 - 47981751
Alignment:
Q  11 ttttatataaatcacttctactatgaagc-atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatc 109  Q
    ||||||| |||||||||||  | |||||  |||||||||||||||||||||   | || ||| |||| | |||||| |||| |||||||| ||||  ||     
T  47981890 ttttataaaaatcacttctgttttgaaggtatccaaacataaatcactttaaattcaactcaattttaaccaaaattaattttacaaaatcaattttatt 47981791  T
Q  110 aaaatcaattttcaccgccgcagaaccaaacacacgctaa 149  Q
    |||||||||| ||  | || || |||||||||||||||||    
T  47981790 aaaatcaattctcgtcaccacacaaccaaacacacgctaa 47981751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 5410703 - 5410805
Alignment:
Q  43 caaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaatt-aattcaatcaaaatcaattttcaccgccgcagaaccaaaca 141  Q
    ||||||||||||| |||||    || |||||||| |||||||||||||||   ||||| ||||  ||||||||||||| || |||||||  |||||||||    
T  5410703 caaacataaatcaatttacatccaactcacttttaatcaaaatcaattctttcaaattcaattatatcaaaatcaattctcgccgccgccaaaccaaaca 5410802  T
Q  142 cac 144  Q
    |||    
T  5410803 cac 5410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 25061287 - 25061392
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctac-aaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| ||||   | || |||||||| | |||||||||||| || ||||| ||||  | |||||||||||||   | ||||||||||||    
T  25061287 atccaaacataaatcaatttatgttcaactcacttttaaccaaaatcaattcaaccaaaatcaattttaacaaaatcaatttttgtcaccgcagaaccaa 25061386  T
Q  139 acacac 144  Q
    ||||||    
T  25061387 acacac 25061392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 45660597 - 45660533
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattc 105  Q
    |||||||||||||||||| |||| |||| ||||||||  |||||||||||| |||| ||| |||||    
T  45660597 atccaaacataaatcactctact-ttaactcacttttagtcaaaatcaattttacagaatcaattc 45660533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 48510969 - 48511074
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| | ||||||||||| |  |||| | ||||||||||||||||||| || |||||||   |||||    
T  48510969 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattatctcaaactcaattcaatcaaaatcaattctcgccgccgccataccaa 48511068  T
Q  139 acacac 144  Q
    ||||||    
T  48511069 acacac 48511074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 11023366 - 11023290
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| | |||||||||||||  |||| | ||||| ||||||||||||||||||| ||||   |||||||||||    
T  11023366 tcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaattttcaccaccgccataccaaacacac 11023290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 29438648 - 29438748
Alignment:
Q  44 aaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    ||||||||| |||||||   | || |||||||| ||||||||||||||| |||||| ||||  |||| |||||||| || || ||||| |  ||||||||    
T  29438648 aaacataaaccactttatattgaactcacttttcatcaaaatcaattctgcaaaatcaattttatcagaatcaattctctccaccgcaaattcaaacaca 29438747  T
Q  144 c 144  Q
    |    
T  29438748 c 29438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 29441220 - 29441356
Alignment:
Q  16 tataaatcacttctactatgaagc-atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaa 113  Q
    |||||||||| | ||||| ||||  ||||||||||||| ||||||| || ||| |||||| | | ||||||||||||   |||| | ||||| |||||||    
T  29441220 tataaatcacgtttactaagaaggtatccaaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattctatcaaaa 29441319  T
Q  114 tcaattttcaccgccgcagaaccaaacacacgctaag 150  Q
    |||||| |   | |||||||| ||||||||| |||||    
T  29441320 tcaattctactcaccgcagaatcaaacacacactaag 29441356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 32369984 - 32369944
Alignment:
Q  79 tcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    ||||||||||||||||| ||| |||||| ||||||||||||    
T  32369984 tcaaaatcaattctacacaatcaattcactcaaaatcaatt 32369944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 40229535 - 40229451
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttca 123  Q
    |||||||||||||||| || ||    || |||||||| | |||||||||||| | |||||| ||||| |||||||||||||||||    
T  40229535 atccaaacataaatcaattcacctcaaactcacttttaaccaaaatcaattccaacaaaatcaattctatcaaaatcaattttca 40229451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 35550231 - 35550370
Alignment:
Q  5 aacatcttttatataaatcacttctactatgaagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaatt 104  Q
    |||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||| || || ||||||||||| |||||||||| |||||||| ||||    
T  35550231 aacatctttcgtatcaatcacttctactatgaagcatccaaacaaaaatcactttacactaaactcacttttgataaaaatcaattttacaaaatcaatt 35550330  T
Q  105 caatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||||||||||||| || ||||| || |||||||||    
T  35550331 caatcaaaatcaattttcgccaccgcaaaatcaaacacac 35550370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 36779436 - 36779539
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    |||||||||||||| |||||||  | || |||||||| |||||||||||||||||||||| ||||  ||||||||||||| ||  | ||||| |||||||    
T  36779436 atccaaacataaattactttacattcaactcacttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaaa 36779535  T
Q  140 caca 143  Q
    ||||    
T  36779536 caca 36779539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 29970847 - 29970956
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    |||||||||||||||||||||  || || |||||||| |  |||||||||| |||||| | ||||| ||||||||||||||| ||  ||||| | |||||    
T  29970847 atccaaacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaattctatcaaaatcaatttttactaccgcatagccaaa 29970946  T
Q  140 cacacgctaa 149  Q
    ||||||||||    
T  29970947 cacacgctaa 29970956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 38715271 - 38715175
Alignment:
Q  42 ccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||||||| ||||| ||| |||| |  |||||||||||| |||||| |||||||| |||||||||||| ||| |  |||||||||    
T  38715271 ccaaacataaatcactttacacttaactcaattttaactaaaatcaattctgcaaaatcaattcaattaaaatcaattttgaccacaacagaaccaa 38715175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 41408276 - 41408339
Alignment:
Q  81 aaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    ||||||||||||||||||||||||||||||||||||||||| | | ||| | ||||||||||||    
T  41408276 aaaatcaattctacaaaattaattcaatcaaaatcaattttaatcaccgtataaccaaacacac 41408339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 41891842 - 41891776
Alignment:
Q  81 aaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgct 147  Q
    ||||||||||||||||||| |||||||||||||| ||||||   | ||||| |||||||||||||||    
T  41891842 aaaatcaattctacaaaatcaattcaatcaaaattaattttagtcaccgcataaccaaacacacgct 41891776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 31246379 - 31246274
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| |  ||||||||||||| |||||| |||||  |||||||||||| || || ||||||||||||    
T  31246379 atccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaattctgtcaaaatcaattatctccaccgcagaaccaa 31246280  T
Q  139 acacac 144  Q
    ||||||    
T  31246279 acacac 31246274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 1836204 - 1836124
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattt 120  Q
    |||||||||||||| |||| ||  | ||  |||||| ||| ||||||||||||||||||| |||| |||||||||||||||    
T  1836204 atccaaacataaataacttcacattcaacccactttagattaaaatcaattctacaaaatcaatttaatcaaaatcaattt 1836124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 45147266 - 45147215
Alignment:
Q  102 attcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaagtca 153  Q
    |||| ||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  45147266 attctatcaaaatcaattctcaccgccgccgaaccaaacacacactaagtca 45147215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 3619132 - 3619028
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    ||||||||| |||||| ||| | || || ||||||||||||| ||||||||| | |||||| ||||| ||||||||||||||| |   |||| |||||||    
T  3619132 atccaaacacaaatcaattt-cactcaactcacttttgatcagaatcaattcattcaaaatcaattctatcaaaatcaatttttatgaccgcggaaccaa 3619034  T
Q  139 acacac 144  Q
    ||||||    
T  3619033 acacac 3619028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 20169490 - 20169567
Alignment:
Q  66 aattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    ||||||||||| |  ||||||||||||||| ||| |||||| ||||||| ||||||| || || || |||||||||||    
T  20169490 aattcacttttaactaaaatcaattctacataatcaattcattcaaaataaattttcgccaccacaaaaccaaacaca 20169567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 28425536 - 28425424
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||    || |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||| || |||    |||||    
T  28425536 atccaaacataaatcaattcacctcaaactcacttttaaccaaaatcaattctaacaaaatcaattctatcaaaatcaattttcgccaccgtcataccaa 28425437  T
Q  139 acacacgctaagt 151  Q
    |||||| ||||||    
T  28425436 acacacactaagt 28425424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 2071592 - 2071537
Alignment:
Q  94 caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaa 149  Q
    |||||| |||||  |||||||||||| ||| |||||||||||||||||||| ||||    
T  2071592 caaaatcaattctgtcaaaatcaattctcatcgccgcagaaccaaacacacactaa 2071537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 10368062 - 10368137
Alignment:
Q  44 aaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    ||||| ||||||||||||  | || ||||||||  |||||||||||| |||||||  |||||| ||||||||||||    
T  10368062 aaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaatt 10368137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 18355811 - 18355760
Alignment:
Q  70 cacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    ||||||| |||| |||||||| |||||||| |||||| ||||||||||||||    
T  18355811 cacttttaatcataatcaattttacaaaatcaattcactcaaaatcaatttt 18355760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 22936857 - 22936746
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| | |||||||||||||  |||| ||||||| ||||||||||||| || || ||||   |||||    
T  22936857 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaacttaattctatcaaaatcaattctcgccaccgccataccaa 22936758  T
Q  139 acacacgctaag 150  Q
    |||||| |||||    
T  22936757 acacacactaag 22936746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 3465529 - 3465399
Alignment:
Q  16 tataaatcacttctactatgaagc-atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaa 113  Q
    |||||||||| | ||||| ||||  ||||||||||||| ||||||| || ||| |||||| | | ||||||||||||   |||| | ||||| |||||||    
T  3465529 tataaatcacatttactaagaaggtatccaaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattctatcaaaa 3465430  T
Q  114 tcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||| |   | ||||||||||||||||||    
T  3465429 tcaattctactcaccgcagaaccaaacacac 3465399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 14520241 - 14520299
Alignment:
Q  86 caattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    ||||| || |||||||||||| |||||||||||||||  | ||||| ||||||||||||    
T  14520241 caattttataaaattaattcagtcaaaatcaattttcggcaccgcaaaaccaaacacac 14520299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 15677789 - 15677739
Alignment:
Q  69 tcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    |||||||| |||||||| |||| || ||| |||||||||||||||||||||    
T  15677789 tcacttttaatcaaaataaattttataaatttaattcaatcaaaatcaatt 15677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 24297627 - 24297551
Alignment:
Q  69 tcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||||||   ||||||||| | |||||| ||||| |||||||| |||||| | | ||||||||||||||||||    
T  24297627 tcacttttgattcgaatcaattcattcaaaatcaattctatcaaaattaatttttatcaccgcagaaccaaacacac 24297551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 24776480 - 24776516
Alignment:
Q  83 aatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  24776480 aatcaattctacaaaatcaatttaatcaaaatcaatt 24776516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 33588765 - 33588829
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaatt 104  Q
    |||||||||||||| | |||||  | || |||||||| ||||||||||||||||| |||| ||||    
T  33588765 atccaaacataaataattttacattaaactcacttttaatcaaaatcaattctactaaatcaatt 33588829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 20677036 - 20677122
Alignment:
Q  5 aacatcttttatataaatcacttctactatgaagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc 91  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  20677036 aacaacttttgtataaatcacttctactatgaagtatccaaacataaatcactttacactaaattcacttttgatcaaaatcaattc 20677122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 5835778 - 5835854
Alignment:
Q  46 acataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttc 122  Q
    |||||||||||||| |  | |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  5835778 acataaatcacttttcattcaattcagttttaatcaaaatcaattctacaaaatcaattcaatcaaaatcaattttc 5835854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 5025551 - 5025655
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    |||||||||||||||| |||   || || |||||| | |  ||||||||||||||||||| |||||||||||||||||||||   | ||||| |||||||    
T  5025551 atccaaacataaatcaatttttgctcaactcacttctaactaaaatcaattctacaaaatcaattcaatcaaaatcaattttagtcaccgcataaccaaa 5025650  T
Q  140 cacac 144  Q
    |||||    
T  5025651 cacac 5025655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 40286304 - 40286408
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    |||||||||||||||| ||| | || || ||| |||| |||||||||||||||| | ||| | ||| |||||||||||||||  || ||||| |||||||    
T  40286304 atccaaacataaatcatttttcactcaactcaattttaatcaaaatcaattctatagaatcagttctatcaaaatcaattttgtccaccgcacaaccaaa 40286403  T
Q  140 cacac 144  Q
    |||||    
T  40286404 cacac 40286408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 38305250 - 38305207
Alignment:
Q  104 tcaatcaaaatcaattttcaccgccgcagaaccaaacacacgct 147  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  38305250 tcaatcaaaatcaattttctccaccgcagaaccaaacacacgct 38305207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 48550237 - 48550344
Alignment:
Q  38 gcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaattttcaccgccgcagaacc 136  Q
    |||||||||||||||||| |||||   ||| |||||||| |||||||||||||||   ||||| ||||| ||||||||||||| || || ||||   |||    
T  48550237 gcatccaaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattctatcaaaatcaattctcgccaccgccatacc 48550336  T
Q  137 aaacacac 144  Q
    ||||||||    
T  48550337 aaacacac 48550344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 2175174 - 2175136
Alignment:
Q  106 aatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  2175174 aatcaaaatcaattttcaccgccgccgaaccaaacacac 2175136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 54488630 - 54488732
Alignment:
Q  43 caaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaaca 141  Q
    ||||||||||||| || ||  | || |||||||| |  ||||||||||||| |||||| |||||  |||||||||||| || || |||||||||||||||    
T  54488630 caaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaattctgtcaaaatcaattatctccaccgcagaaccaaaca 54488729  T
Q  142 cac 144  Q
    |||    
T  54488730 cac 54488732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 28947811 - 28947706
Alignment:
Q  42 ccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctac-aaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaac 140  Q
    ||||||||||||||||||||  | || |||||||| | |||||||||||| ||  |||| ||||| | ||||||||||| |  || ||||| ||||||||    
T  28947811 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattccacttaaatcaattccaccaaaatcaattctttccaccgcacaaccaaac 28947712  T
Q  141 acacgc 146  Q
    ||||||    
T  28947711 acacgc 28947706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 20232036 - 20232108
Alignment:
Q  71 acttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    |||||| | ||||||||||| || ||||| ||||| | ||||||||||| ||||| ||||| |||||||||||    
T  20232036 acttttaaccaaaatcaattttataaaatcaattccaccaaaatcaattctcaccaccgcataaccaaacaca 20232108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 22694656 - 22694548
Alignment:
Q  45 aacataaatcactttactcttaattcacttttgatcaaaatcaattctaca-aaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    ||||||||||||||||   | || |||||||| | |||||||||||||||  |||| ||||| | ||||||||||| |  || ||||| |||||||||||    
T  22694656 aacataaatcactttatgttcaactcacttttaaccaaaatcaattctacttaaatcaattctaccaaaatcaattctttccaccgcacaaccaaacaca 22694557  T
Q  144 cgctaagtc 152  Q
    |||| ||||    
T  22694556 cgcttagtc 22694548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 39000566 - 39000530
Alignment:
Q  85 tcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    ||||||||||||||| |||||||||||||||||||||    
T  39000566 tcaattctacaaaatcaattcaatcaaaatcaatttt 39000530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 1616522 - 1616561
Alignment:
Q  80 caaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  1616522 caaaatcaattctacaaaatcaattctatcaaaatcaatt 1616561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 38740366 - 38740287
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    ||||||||||||||||||| |   | || ||||||||   ||||||||||| |||||||| |||||| ||||||||||||    
T  38740366 atccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 36150626 - 36150676
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaatt 90  Q
    ||||||||||||||||||||||  | || |||||||| |||||||||||||    
T  36150626 atccaaacataaatcactttacattcaactcacttttaatcaaaatcaatt 36150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 26651908 - 26651807
Alignment:
Q  44 aaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacac 142  Q
    |||||||||||| || ||  | || |||||||| | |||||||||||||  |||| ||||||| ||||||||||||| || |||||||   |||||||||    
T  26651908 aaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaacttaattctatcaaaatcaattctcgccgccgccataccaaacac 26651809  T
Q  143 ac 144  Q
    ||    
T  26651808 ac 26651807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 28987069 - 28987150
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaa 149  Q
    |||||||| | |||||||||||||  |||| | ||||| ||||||||||||||||||| ||||   ||||||||||| ||||    
T  28987069 tcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaattttcaccaccgccataccaaacacacactaa 28987150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 38306033 - 38306138
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| ||  |  | || |||||||| |  ||||||||||||| |||||| |||||  |||||||||||| || || ||| ||||||||    
T  38306033 atccaaacataaatcaattcgcattcaactcacttttaacaaaaatcaattctaacaaaatcaattctgtcaaaatcaattatctccaccgtagaaccaa 38306132  T
Q  139 acacac 144  Q
    ||||||    
T  38306133 acacac 38306138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 46958085 - 46958138
Alignment:
Q  94 caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgct 147  Q
    |||||| ||||| |||||||||||||||  || ||||| |||||||||||||||    
T  46958085 caaaatcaattctatcaaaatcaattttttccaccgcacaaccaaacacacgct 46958138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 54487284 - 54487231
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta 93  Q
    |||||||||||||||| |||||  | || |||||||||||| ||||||||||||    
T  54487284 atccaaacataaatcaatttacattcaactcacttttgatcgaaatcaattcta 54487231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 2052109 - 2052053
Alignment:
Q  66 aattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttc 122  Q
    ||||||||||| | ||||| ||||| ||||||||| ||||| | |||||||||||||    
T  2052109 aattcacttttaaacaaaaacaattttacaaaattgattcatttaaaatcaattttc 2052053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 14564170 - 14564098
Alignment:
Q  80 caaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaagt 151  Q
    |||||||||||||  |||| | ||||| ||||||||||||| || |||||||  |||||||||||| ||||||    
T  14564170 caaaatcaattctctcaaactcaattctatcaaaatcaattctctccgccgcccaaccaaacacacactaagt 14564098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 30889878 - 30889942
Alignment:
Q  48 ataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaa 112  Q
    ||||||||||||||  |  |||||||||| ||| ||||||||| ||||||||||| ||| |||||    
T  30889878 ataaatcactttaccttctattcacttttaatctaaatcaattttacaaaattaactcattcaaa 30889942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 37036804 - 37036719
Alignment:
Q  5 aacatcttttatataaatcacttctactatgaagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaatt 90  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||||    
T  37036804 aacatctttcatataaatcacttatactatgaagcatccaaagataaatcactttacactaaactcacttttgatcaaaatcaatt 37036719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 2868415 - 2868333
Alignment:
Q  39 catccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    ||||||||| |||||||||||||  | || |||||||| |  ||||||||||||||||||||||||| |  ||||||||||||    
T  2868415 catccaaacttaaatcactttacattcaactcacttttaactaaaatcaattctacaaaattaattctactaaaatcaatttt 2868333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 3747653 - 3747541
Alignment:
Q  38 gcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaatcaattttcaccgccgcagaacc 136  Q
    |||||||||||||||| | ||| | || || ||||||||||||  ||||||||| | || ||| ||||| ||||||||||||||| | | ||||| ||||    
T  3747653 gcatccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcataacc 3747555  T
Q  137 aaacacacgctaag 150  Q
    |||||||| |||||    
T  3747554 aaacacacactaag 3747541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 19784863 - 19784944
Alignment:
Q  39 catccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||||||| ||||||||  | || |||||||| | ||||||||||||  | ||||| |||||||||||||||||||    
T  19784863 catccaaacataaaccactttacattcaactcacttttaaccaaaatcaattcaaataaaatcaattcaatcaaaatcaatt 19784944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 22482240 - 22482345
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| | |||||||||||||  |||||| ||||| ||||||||||||| || |||||||   |||||    
T  22482240 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattctatcaaaatcaattctccccgccgccataccaa 22482339  T
Q  139 acacac 144  Q
    ||||||    
T  22482340 acacac 22482345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 35847976 - 35847841
Alignment:
Q  16 tataaatcacttctactatgaagc-atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaa 113  Q
    |||||||||| | ||||| ||||  ||||||||||||| ||||||| || ||| |||||| | | ||||||||||||   |||| | ||||| |||||||    
T  35847976 tataaatcacgtttactaagaaggtatccaaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattctatcaaaa 35847877  T
Q  114 tcaattttcaccgccgcagaaccaaacacacgctaa 149  Q
    |||||| |   | |||||||||||||||||| ||||    
T  35847876 tcaattctactcaccgcagaaccaaacacacactaa 35847841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 2483775 - 2483665
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| |  ||||||||||| | |||||| ||||   || |||||||||||| || ||||||||| ||    
T  2483775 atccaaacataaatcaattcacattcaactcacttttaactaaaatcaattccaacaaaatcaattatgtccaaatcaattttctccaccgcagaactaa 2483676  T
Q  139 acacacgctaa 149  Q
    |||||||||||    
T  2483675 acacacgctaa 2483665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 22811077 - 22811131
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctac 94  Q
    ||||||||||||||||||||||  | || |||||||| | |||||||||||||||    
T  22811077 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctac 22811131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 7385963 - 7385902
Alignment:
Q  70 cacttttgatcaaaatcaattctacaaaa-ttaattcaatcaaaatcaattttcaccgccgc 130  Q
    ||||||| | |||||||||||||  |||| ||||||| ||||||||||||| ||||||||||    
T  7385963 cacttttaaccaaaatcaattctctaaaacttaattctatcaaaatcaattctcaccgccgc 7385902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 8049112 - 8048999
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||    || |||||||| | |||||||||||||  |||| | ||||| ||||||||||||| ||||||||||   |||||    
T  8049112 atccaaacataaatcaattaacctcaaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaattctcaccgccgctataccaa 8049013  T
Q  139 acacacgctaagtc 152  Q
    | |||| |||||||    
T  8049012 agacacactaagtc 8048999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 43152424 - 43152316
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    |||||||||||||||||||| |  | || |||||||| ||  ||||||| | |  ||||| ||||||| ||||||||||| |   | ||||| |||||||    
T  43152424 atccaaacataaatcacttttcattcaactcacttttaattgaaatcaactatgtaaaatcaattcaaacaaaatcaattatttgcaccgcataaccaaa 43152325  T
Q  140 cacacgcta 148  Q
    |||||||||    
T  43152324 cacacgcta 43152316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 3605814 - 3605711
Alignment:
Q  41 tccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaac 140  Q
    ||||||||||||||||||| | || || |||||||| |||||||||||||||||||||| ||||  |||||||||||||||  || || || ||||||||    
T  3605814 tccaaacataaatcacttttcactcaactcacttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattttgtccaccacacaaccaaac 3605715  T
Q  141 acac 144  Q
    ||||    
T  3605714 acac 3605711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 8551192 - 8551046
Alignment:
Q  5 aacatcttttatataaatcacttctactatgaagca-tccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaat 103  Q
    ||||| ||||||||||||||||||||   | |||   ||||||||||||||||||| | || || |||||||| |||| |||||||| ||   ||| |||    
T  8551192 aacattttttatataaatcacttctatcgtaaaggtgtccaaacataaatcacttttcactcaactcacttttaatcagaatcaattatatggaatcaat 8551093  T
Q  104 tcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaag 150  Q
    || ||||||||||||| |  || || || ||||||||||||||||||    
T  8551092 tctatcaaaatcaattatatccaccacacaaccaaacacacgctaag 8551046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 957615 - 957536
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattt 120  Q
    |||||||||||||||| |||| ||||| |||||||||  ||||||| |||| || | |||||||||| |||||||||||||    
T  957615 atccaaacataaatcatttta-tcttatttcacttttactcaaaataaattttatagaattaattcattcaaaatcaattt 957536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 1499996 - 1500074
Alignment:
Q  43 caaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    ||||||||||||| ||||| || || || |||||   ||||||||||| |||||||| |||||| ||||||||||||||    
T  1499996 caaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatttt 1500074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 4911001 - 4911111
Alignment:
Q  40 atccaaacataaatcacttt-actcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||||||| | ||  |||| |||||| | |||||| ||||||| | ||| ||||| |||||||||||||||| |  ||  | ||||||    
T  4911001 atccaaacataaatcacttttagtcagaatt-acttttaaccaaaattaattctagagaatcaattctatcaaaatcaattttctcaaccatataaccaa 4911099  T
Q  139 acacacgctaag 150  Q
    ||||||||||||    
T  4911100 acacacgctaag 4911111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 5456032 - 5456107
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatc 115  Q
    |||||||||||||| | |||||  | ||||||||||| |||||||| |||| || ||||| ||||| |||||||||    
T  5456032 atccaaacataaattattttacattcaattcactttttatcaaaattaattttataaaataaattctatcaaaatc 5456107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 5584112 - 5584002
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || ||||||||  ||||||||||||||  |||||| ||||| ||||||||||||| ||  | |||||||||| |    
T  5584112 atccaaacataaatcaatt-acattaaactcacttttagtcaaaatcaattctgtcaaaatcaattctatcaaaatcaattctcgtcaccgcagaaccta 5584014  T
Q  139 acacacgctaag 150  Q
    |||||| |||||    
T  5584013 acacacactaag 5584002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 15151594 - 15151464
Alignment:
Q  16 tataaatcacttctactatgaagc-atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaa 113  Q
    |||||||||| | ||||| ||||  ||||||||||||| ||||||| || ||| |||||| | | ||||||||||||   |||| | ||||| |||||||    
T  15151594 tataaatcacgtttactaagaaggtatccaaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattctatcaaaa 15151495  T
Q  114 tcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||| |   | ||||||||||||||||||    
T  15151494 tcaattctactcaccgcagaaccaaacacac 15151464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 1312474 - 1312398
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| | ||||||||||| || |||| |  |||| |||||||||||||||| || |||| |||||||||||||    
T  1312474 tcacttttaaccaaaatcaattttatcaaactcgattctatcaaaatcaattttctccaccgctgaaccaaacacac 1312398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 26274636 - 26274580
Alignment:
Q  94 caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaag 150  Q
    |||||| ||||| ||||||||||||| ||   ||||||||||||||||||| |||||    
T  26274636 caaaatcaattctatcaaaatcaattctcgttgccgcagaaccaaacacacactaag 26274580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 33899040 - 33898964
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| |||||||||||||||  |||| | ||||| ||||||||||||| ||||| ||||   |||||||||||    
T  33899040 tcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaattctcaccaccgctataccaaacacac 33898964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 25181247 - 25181353
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    |||||||||||||| | |||||  | || |||||||| |||||||||||||||||||||| ||||||||||| ||||||| |  || ||||| |||||||    
T  25181247 atccaaacataaataattttacattaaactcacttttaatcaaaatcaattctacaaaatcaattcaatcaatatcaattctagccaccgcataaccaaa 25181346  T
Q  140 cacacgc 146  Q
    |||||||    
T  25181347 cacacgc 25181353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 44225602 - 44225706
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    ||||||||||||||||||||||  | || |||||||| |  ||||||||||||||||||| ||||  || ||||||||||||| || || || |||||||    
T  44225602 atccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaattatattaaaatcaattttctccaccacacaaccaaa 44225701  T
Q  140 cacac 144  Q
    |||||    
T  44225702 cacac 44225706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 29252149 - 29252091
Alignment:
Q  94 caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaagtc 152  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  29252149 caaaatcaattcaatcaaaatcaatttttaccgctgcagaaccaaacacacgcgaagtc 29252091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 49526733 - 49526628
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| |||||  | ||||||||||| |||||||||||||||| |||||| ||||  |||||| |||||| |  |  ||||||||||||    
T  49526733 atccaaacataaatcaatttacaatcaattcacttttaatcaaaatcaattctatcaaaatcaatttcatcaaactcaattcttgctaccgcagaaccaa 49526634  T
Q  139 acacac 144  Q
    ||||||    
T  49526633 acacac 49526628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 53078436 - 53078476
Alignment:
Q  81 aaaatcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53078436 aaaatcaattctacaaaattaattcaatcaaaatcaatttt 53078476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 52813227 - 52813364
Alignment:
Q  16 tataaatcacttctactatgaagc-atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaa 113  Q
    |||||||||| | ||||| ||||  ||||||||||||| ||||||| || ||| |||||| | | ||||||||||||   |||| | ||||| |||||||    
T  52813227 tataaatcacgtttactaagaaggtatccaaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattctatcaaaa 52813326  T
Q  114 tcaattttcaccgccgcagaaccaaacacacgctaagt 151  Q
    ||||||||   | |||||||||||||||||| ||||||    
T  52813327 tcaattttactcaccgcagaaccaaacacacactaagt 52813364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 53567969 - 53568074
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    |||||||||||||| ||||| |  | || |||||||| ||||||||||||| |  ||||| |||||| |||||||||||||||| |  |||| || ||||    
T  53567969 atccaaacataaattacttttcattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaattttcatcatcgcataatcaaa 53568068  T
Q  140 cacacg 145  Q
    ||||||    
T  53568069 cacacg 53568074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 4486852 - 4486928
Alignment:
Q  43 caaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    ||||||||||||| | |||  ||||||||||||| || ||||||| ||||| ||||| |||| ||||||||||||||    
T  4486852 caaacataaatcattctacgtttaattcacttttaattaaaatcatttctataaaatcaatttaatcaaaatcaatt 4486928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 29252221 - 29252138
Alignment:
Q  5 aacatcttttatataaatcacttctactatgaagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattc 91  Q
    ||||||||| ||||||||||||| |    |||||||  ||||||||||||| |||||  |||| |||||||||||||||||||||||    
T  29252221 aacatctttcatataaatcacttttt---tgaagcaggcaaacataaatcaatttacaattaactcacttttgatcaaaatcaattc 29252138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 30301289 - 30301201
Alignment:
Q  5 aacatcttttatataaatcacttctactatgaagc-atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct 92  Q
    ||||||||| ||| |||||||||||| |||||||  |||||||||||| ||||| |||  | || |||||||| |||||||||||||||    
T  30301289 aacatctttcatacaaatcacttctattatgaagggatccaaacataattcactatacattcaactcacttttaatcaaaatcaattct 30301201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 42644299 - 42644401
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaa-ttctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    ||||||||||||||||||||||  | || |||||||| |  |||||||| || || ||||| |||||| |||||||||||| ||| | ||||| ||||||    
T  42644299 atccaaacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaattctcatcaccgcataaccaa 42644398  T
Q  139 aca 141  Q
    |||    
T  42644399 aca 42644401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 7012677 - 7012742
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaatt 104  Q
    ||||||||||||||||||||||  | || |||||||| | |||||||||||||| |||||||||||    
T  7012677 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctaccaaaattaatt 7012742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 34561145 - 34561250
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| ||  |  | || |||||||| | ||||||||||| || |||| ||||||| |||||||||||||||| || | || |||||||    
T  34561145 atccaaacataaatcaattcgcattcaactcacttttaaccaaaatcaattttatcaaacttaattctatcaaaatcaattttctccactgctgaaccaa 34561244  T
Q  139 acacac 144  Q
    ||||||    
T  34561245 acacac 34561250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 35264401 - 35264324
Alignment:
Q  42 ccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||| |||||||||| | || ||||||||| | | |||||||| |||| ||| |||||| ||||||||||||    
T  35264401 ccaaacataactcactttactttcaactcacttttggttacaatcaattttacagaatcaattcactcaaaatcaatt 35264324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 52736801 - 52736881
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattt 120  Q
    ||||||||| |||||||||| |  | |  |||||||| |||||||||| ||||| ||||| ||||||| ||||||||||||    
T  52736801 atccaaacacaaatcacttttcattaacctcacttttaatcaaaatcacttctataaaatcaattcaaccaaaatcaattt 52736881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 31766239 - 31766160
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||||||||||||||   | || ||||||||   |||||| |||| |||||||| |||||| ||||||||||||    
T  31766239 atccaaacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 41115314 - 41115251
Alignment:
Q  80 caaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    ||||||||||| |||||||| |||||| ||| |||||||| || ||||| || |||||||||||    
T  41115314 caaaatcaattatacaaaatcaattcattcataatcaattctcgccgccacaaaaccaaacaca 41115251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 49634036 - 49633994
Alignment:
Q  82 aaatcaattctacaaaattaattcaatcaaaatcaattttcac 124  Q
    |||| |||| |||||||| ||||||||||||||||||||||||    
T  49634036 aaattaattttacaaaatcaattcaatcaaaatcaattttcac 49633994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 10853331 - 10853226
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| ||||   | || |||||||| | |||||||||||||  |||| | ||||| ||||||||||||| ||||| ||||   |||||    
T  10853331 atccaaacataaatcaatttatattaaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaattctcaccaccgctataccaa 10853232  T
Q  139 acacac 144  Q
    ||||||    
T  10853231 acacac 10853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 50664795 - 50664907
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| | |||||||||||||  |||| | ||||| ||||||||||||| || || ||||   |||||    
T  50664795 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaattctcgccaccgccataccaa 50664894  T
Q  139 acacacgctaagt 151  Q
    |||||| ||||||    
T  50664895 acacacactaagt 50664907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 52966844 - 52966768
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| | |||||||||||||  |||||| ||||| |||||||||||||||| || || |  ||||||||||||    
T  52966844 tcacttttaaccaaaatcaattctctcaaaatcaattctatcaaaatcaattttctccacctccaaaccaaacacac 52966768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 53074968 - 53075044
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| | |||||||||||||  |||| | ||||  |||||||||||||||||||||||| | | |||||||||    
T  53074968 tcacttttaaccaaaatcaattctctcaaactcaattatatcaaaatcaattttcaccgccgccgtatcaaacacac 53075044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 47217594 - 47217487
Alignment:
Q  38 gcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaacc 136  Q
    |||||||||||||||||| || ||    || |||||||| |||||||||||||||  |||| | ||||| |||||||||||||||||||||||| |||||    
T  47217594 gcatccaaacataaatcaattcacatcaaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaattttcaccgccgccgaacc 47217495  T
Q  137 aaacacac 144  Q
    ||||||||    
T  47217494 aaacacac 47217487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 42752242 - 42752131
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| |  ||||||||||||| |||||| |||||  |||||||||||| || || ||||||||||||    
T  42752242 atccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaattctgtcaaaatcaattatctccaccgcagaaccaa 42752143  T
Q  139 acacacgctaag 150  Q
    |||||| |||||    
T  42752142 acacacactaag 42752131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 32186996 - 32187078
Alignment:
Q  38 gcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||||||||||| |||||   ||| |||||||| |||||||||||||||   ||||||||||| |||||||||||||    
T  32186996 gcatccaaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaattaattctatcaaaatcaatt 32187078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 33936868 - 33936762
Alignment:
Q  43 caaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacac 142  Q
    |||||||||||||||||||  | |||| |||||  | |||||  |||||||| |||| ||||| | |||||||||||||  || ||||| ||||||||||    
T  33936868 caaacataaatcactttacattcaattaactttgaaccaaaagtaattctacgaaatcaattctaccaaaatcaattttttccaccgcacaaccaaacac 33936769  T
Q  143 acgctaa 149  Q
    |||||||    
T  33936768 acgctaa 33936762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 16353488 - 16353589
Alignment:
Q  43 caaacataaatcactttactcttaattcacttttgatcaaaa-tcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaaca 141  Q
    |||||||||| |||||||   | || |||||||| ||||||| |||||||| |||||| ||||| |||| |||||||| || || |||||||||||||||    
T  16353488 caaacataaaccactttagattaaactcacttttcatcaaaaatcaattctgcaaaatcaattctatcagaatcaattatctccaccgcagaaccaaaca 16353587  T
Q  142 ca 143  Q
    ||    
T  16353588 ca 16353589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 40491671 - 40491772
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    ||||||| ||||||||||||||  | || ||||||||  |||||||||||| |||| ||| |||||| |||||||||||| |   | |||||||||||||    
T  40491671 atccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattcttgtcaccgcagaaccaaa 40491770  T
Q  140 ca 141  Q
    ||    
T  40491771 ca 40491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 2839349 - 2839452
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| |||| | | || |||||||| || |||||| |||||| |||||| |||||||||| |||||||||||  | ||||| ||||||    
T  2839349 atccaaacataaatcaatttagt-tcaactcacttttcataaaaatctattctatcaaaatcaattcaatcataatcaattttcgtcaccgcataaccaa 2839447  T
Q  139 acaca 143  Q
    |||||    
T  2839448 acaca 2839452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 4228605 - 4228684
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||||||||||||| |  | || |||||||| ||||||||||||| |  ||||| ||||||| |||||||||||    
T  4228605 atccaaacataaatcacttttcattcaactcacttttaatcaaaatcaattatgtaaaatcaattcaaccaaaatcaatt 4228684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 39634216 - 39634105
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || |   | || |||||||| | |||||||||||||| |||||| |||||  || ||||||||| || || ||||||||||||    
T  39634216 atccaaacataaatcaattcatattcaactcacttttaaccaaaatcaattctaacaaaatcaattctgtccaaatcaattctctccaccgcagaaccaa 39634117  T
Q  139 acacacgctaag 150  Q
    |||||| |||||    
T  39634116 acacacactaag 39634105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 41715713 - 41715820
Alignment:
Q  38 gcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaattttcaccgccgcagaacc 136  Q
    |||||||||||||||||| |||||   ||| |||||||| |||||||||||||||   ||||| ||||| ||||||||||||| || || ||||   |||    
T  41715713 gcatccaaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattctatcaaaatcaattctcgccaccgccatacc 41715812  T
Q  137 aaacacac 144  Q
    ||||||||    
T  41715813 aaacacac 41715820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 20088929 - 20089039
Alignment:
Q  42 ccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctac-aaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaac 140  Q
    ||||||||||||||||||||  | || |||||||| | ||||||||||| |||  |||| ||||| ||||||||||||| |  || ||||| |||| |||    
T  20088929 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattatacttaaatcaattctatcaaaatcaattctttccaccgcacaaccgaac 20089028  T
Q  141 acacgctaagt 151  Q
    ||||| |||||    
T  20089029 acacgttaagt 20089039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 32683702 - 32683764
Alignment:
Q  81 aaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    ||||||||||||||| ||| |||||||||||||||||||||  || | ||| |||||||||||    
T  32683702 aaaatcaattctacataatcaattcaatcaaaatcaatttttcccactgcacaaccaaacaca 32683764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 38494314 - 38494367
Alignment:
Q  94 caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgct 147  Q
    |||||| ||||||| |||||||||||||| || ||||| |||||||||||||||    
T  38494314 caaaatcaattcaaacaaaatcaattttcgccaccgcacaaccaaacacacgct 38494367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 44391200 - 44391277
Alignment:
Q  66 aattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    ||||||||||| |  ||||||||||||||| ||| |||||| ||||||| ||||||| || || || |||||||||||    
T  44391200 aattcacttttaactaaaatcaattctacataatcaattcattcaaaataaattttcgccaccacaaaaccaaacaca 44391277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 37639489 - 37639593
Alignment:
Q  41 tccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaa 139  Q
    ||||||||||||||| || ||  | ||||||||||| | |||||||||||||  |||| | ||||| ||||||||||||| || |||||||   ||||||    
T  37639489 tccaaacataaatcaattcacattcaattcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaattctccccgccgccataccaaa 37639588  T
Q  140 cacac 144  Q
    |||||    
T  37639589 cacac 37639593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 43186613 - 43186537
Alignment:
Q  73 ttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaa 149  Q
    |||| |||||||||||||||| | ||| ||||  |||||||||||||||  || ||||| |||||||||||| ||||    
T  43186613 ttttaatcaaaatcaattctatagaatcaattatatcaaaatcaattttatccaccgcacaaccaaacacacactaa 43186537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 39391188 - 39391083
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaatt-aattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||    || |||||||| | |||||||||||||| |||| | ||||| |||||||||||||||| || ||||   |||||    
T  39391188 atccaaacataaatcaattcacctcaaactcacttttaaccaaaatcaattctaaaaaaatcaattctatcaaaatcaattttcgccaccgccataccaa 39391089  T
Q  139 acacac 144  Q
    ||||||    
T  39391088 acacac 39391083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 19097484 - 19097560
Alignment:
Q  69 tcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| |||||||||||||| | |||| | ||||| |||||||| |||| ||||||||||   |||||||||||    
T  19097484 tcacttttaatcaaaatcaattctttcaaactcaattctatcaaaattaattctcaccgccgccataccaaacacac 19097560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 31625560 - 31625632
Alignment:
Q  71 acttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    |||||| | |||||||||||||||| ||||||||| ||||||||| ||| |  || || || |||||||||||    
T  31625560 acttttaaccaaaatcaattctacagaattaattctatcaaaatcgattatttccaccacacaaccaaacaca 31625632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 26806317 - 26806238
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||||||||||||| | || || |||||||| |||||||||||||||  ||||||||||||| |||||||||||    
T  26806317 atccaaacataaatcacttttcactcaactcacttttaatcaaaatcaattctgtaaaattaattcaaccaaaatcaatt 26806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 12110914 - 12111024
Alignment:
Q  34 tgaagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcaga 133  Q
    ||||| |||||||||||||||||||||   | || |||||||| | |||||||||||  ||||||| ||||| ||||||||||||||||  | ||||| |    
T  12110914 tgaagtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcaca 12111013  T
Q  134 accaaacacac 144  Q
    |||||||||||    
T  12111014 accaaacacac 12111024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 3853946 - 3854056
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| |||||  | || |||||||| |||||||||||||||| |||||| ||||| |||||| |||||| || |  ||||| ||||||    
T  3853946 atccaaacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaatcaattccatcaaactcaattctcgctaccgcacaaccaa 3854045  T
Q  139 acacacgctaa 149  Q
    |||||| ||||    
T  3854046 acacacactaa 3854056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 5055244 - 5055329
Alignment:
Q  69 tcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaagtcaa 154  Q
    |||||||| | ||||||||||||| |||||||||||||||||||||||| |||  || ||||  || |||||||||||||| ||||    
T  5055244 tcacttttaaccaaaatcaattctgcaaaattaattcaatcaaaatcaaattttgccaccgcgtaatcaaacacacgctaattcaa 5055329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 3602482 - 3602417
Alignment:
Q  80 caaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||||||||| |||||| |||||| | |||||||||||||| | ||||||||||||||||||    
T  3602482 caaaatcaattctatcaaaatcaattcagtaaaaatcaattttcatcaccgcagaaccaaacacac 3602417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 18511148 - 18511256
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  |||| |||||||| | ||||||||||| || |||||| ||||  ||||||||||||| || || |||| |||||||    
T  18511148 atccaaacataaatcaattaacatttaaatcacttttaaccaaaatcaattatatcaaaatcaattttatcaaaatcaattctctccaccgctgaaccaa 18511247  T
Q  139 acacacgct 147  Q
    || ||||||    
T  18511248 acgcacgct 18511256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 1763270 - 1763373
Alignment:
Q  44 aaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacaca 143  Q
    |||||||||||||||||   | || ||| |||| | ||||||||||| |||||||| ||||  ||||||||||||| ||  | ||||| |||||||||||    
T  1763270 aaacataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaatcaattttatcaaaatcaattctcgtcaccgcacaaccaaacaca 1763369  T
Q  144 cgct 147  Q
    ||||    
T  1763370 cgct 1763373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 25747943 - 25747839
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| |||||||||||||||  |||| | ||||| |||||| |||||| ||||| |||| |||||||    
T  25747943 atccaaacataaatcaatt-acattcaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaactcaattatcaccaccgcggaaccaa 25747845  T
Q  139 acacac 144  Q
    ||||||    
T  25747844 acacac 25747839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 34433368 - 34433263
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| |||||||||||||||  |||| | ||||| ||||||||||||| ||  | |||| |||||||    
T  34433368 atccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattctgtcaaactcaattctatcaaaatcaattctcttcaccgctgaaccaa 34433269  T
Q  139 acacac 144  Q
    ||||||    
T  34433268 acacac 34433263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 5916275 - 5916199
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| | |||||||||||||  |||||||||||| ||||||||||||| || |||||||   |||||||||||    
T  5916275 tcacttttaaccaaaatcaattctctcaaaattaattctatcaaaatcaattctccccgccgccataccaaacacac 5916199  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 11759822 - 11759770
Alignment:
Q  69 tcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    |||||||| ||||||||||||| |||||||| |||||| ||||| ||||||||    
T  11759822 tcacttttaatcaaaatcaattttacaaaatcaattcactcaaactcaatttt 11759770  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 13238936 - 13238976
Alignment:
Q  81 aaaatcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  13238936 aaaatcaattttacaaaatgaattcaatcaaaatcaatttt 13238976  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 36312351 - 36312427
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| | |||||||||||||  |||||||||||| ||||||||||||| || |||||||   |||||||||||    
T  36312351 tcacttttaaccaaaatcaattctctcaaaattaattctatcaaaatcaattctccccgccgccataccaaacacac 36312427  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 36548274 - 36548350
Alignment:
Q  69 tcacttttgatcaaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacac 144  Q
    |||||||| |||||||||||||||  |||| | ||||| ||||||||||||||||||| ||||   |||||||||||    
T  36548274 tcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaattttcaccaccgccataccaaacacac 36548350  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 8800657 - 8800607
Alignment:
Q  71 acttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    |||||| || |||||||||||||||||||| |||  |||||||||||||||    
T  8800657 acttttaattaaaatcaattctacaaaattgattatatcaaaatcaatttt 8800607  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 23359992 - 23359938
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctac 94  Q
    ||||||||||||||||||||||  | || |||||||| | |||||||||||||||    
T  23359992 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctac 23359938  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 43436345 - 43436291
Alignment:
Q  38 gcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct 92  Q
    ||||| |||||||||||| |||||   |||||||||||| |||||||||||||||    
T  43436345 gcatcaaaacataaatcaatttacatctaattcacttttaatcaaaatcaattct 43436291  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 1945101 - 1944996
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaa 138  Q
    |||||||||||||||| || ||  | || |||||||| | |||||||||||||  |||| | ||||| ||||||||||||| || |||||||   |||||    
T  1945101 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaattctccccgccgccataccaa 1945002  T
Q  139 acacac 144  Q
    ||||||    
T  1945001 acacac 1944996  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 7741138 - 7741061
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaa 117  Q
    |||||||||||| ||| || | | | || ||||||||||||| |||||||| || | |||||||||| ||||||||||    
T  7741138 atccaaacataactcatttcattttcaactcacttttgatcagaatcaattttatagaattaattcattcaaaatcaa 7741061  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 27911499 - 27911548
Alignment:
Q  101 aattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaag 150  Q
    ||||| ||||||||||||| || ||||||| ||||||||||||| |||||    
T  27911499 aattctatcaaaatcaattatcgccgccgccgaaccaaacacacactaag 27911548  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 31453515 - 31453588
Alignment:
Q  82 aaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaagtcaag 155  Q
    ||||||| | ||| |||| ||||| |||||||||||| ||  || ||||| ||||||||||||||||| |||||    
T  31453515 aaatcaaatttacgaaatcaattctatcaaaatcaatattatcccccgcacaaccaaacacacgctaaatcaag 31453588  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 16467132 - 16467212
Alignment:
Q  40 atccaaacataaatcactttactcttaattcacttttgatcaaaatcaattct-acaaaattaattcaatcaaaatcaatt 119  Q
    |||||||||||||||| |||||   ||| |||||||| | ||||||||||| |  |||||| ||||| |||||||||||||    
T  16467132 atccaaacataaatcaatttacatctaactcacttttaaccaaaatcaattatgccaaaatcaattctatcaaaatcaatt 16467212  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 17220447 - 17220483
Alignment:
Q  85 tcaattctacaaaattaattcaatcaaaatcaatttt 121  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  17220447 tcaattttacaaaactaattcaatcaaaatcaatttt 17220483  T

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Target: scaffold0172 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 15327 - 15217
Alignment:
Q  34 tgaagcatccaaacataaatcactttactcttaattcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcaga 133  Q
    ||||| |||||||||||||||||||||   | || |||||||| | |||||||||||  ||||||| ||||| ||||||||||||||||  | ||||| |    
T  15327 tgaagtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcaca 15228  T
Q  134 accaaacacac 144  Q
    |||||||||||    
T  15227 accaaacacac 15217  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 7358 - 7426
Alignment:
Q  81 aaaatcaattctacaaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaa 149  Q
    |||||||||||| |||||| |||| |||||||||||||| | ||  ||||| |||||||||||| ||||    
T  7358 aaaatcaattctgcaaaatcaatttaatcaaaatcaattatgacaaccgcaaaaccaaacacacactaa 7426  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 253205 - 253277
Alignment:
Q  80 caaaatcaattcta-caaaattaattcaatcaaaatcaattttcaccgccgcagaaccaaacacacgctaagt 151  Q
    |||||||||||||  |||| | ||||| ||||||||||||| || |||||||  |||||||||||| ||||||    
T  253205 caaaatcaattctctcaaactcaattctatcaaaatcaattctctccgccgcccaaccaaacacacactaagt 253277  T

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