View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_54 (Length: 321)

Name: NF9183_low_54
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_54
NF9183_low_54
[»] chr1 (5 HSPs)
chr1 (215-300)||(13244855-13244940)
chr1 (97-194)||(13244997-13245094)
chr1 (6-73)||(5831664-5831731)
chr1 (246-302)||(13081197-13081253)
chr1 (11-70)||(13351022-13351081)
[»] chr2 (3 HSPs)
chr2 (11-73)||(30906183-30906245)
chr2 (6-73)||(1400684-1400751)
chr2 (11-73)||(33667452-33667514)
[»] chr6 (5 HSPs)
chr6 (36-73)||(7915612-7915649)
chr6 (6-68)||(9068537-9068599)
chr6 (40-73)||(23595069-23595102)
chr6 (9-73)||(3222347-3222410)
chr6 (6-68)||(22608281-22608343)
[»] chr3 (3 HSPs)
chr3 (6-73)||(19280329-19280396)
chr3 (6-52)||(11501244-11501290)
chr3 (16-68)||(11509823-11509875)
[»] chr7 (2 HSPs)
chr7 (6-73)||(28805150-28805217)
chr7 (40-73)||(32964917-32964950)
[»] chr4 (1 HSPs)
chr4 (6-73)||(17633252-17633319)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 13244940 - 13244855
Alignment:
Q  215 agacacaacatgcatcacacttgcaactttgttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaa 300  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13244940 agacacaacatgcatcacacttacaactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaa 13244855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 13245094 - 13244997
Alignment:
Q  97 attaaatatatcacatcataattacaccattccaaacattgaggattttattcgttcgctgtaacacacacagcaacacaaatagtataatttgacaa 194  Q
    |||||||||||||| | | || ||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||    
T  13245094 attaaatatatcacgtaacaaatacacaattccaaacattgaggattttattcgtttgttgtaacacacagagcaacacaaatagtataatttgacaa 13244997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 5831664 - 5831731
Alignment:
Q  6 cacacaccatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    |||| |||||||||||||||| || |||  ||||||||||||||||| |||||||||| |||||||||    
T  5831664 cacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaaaggtg 5831731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 13081253 - 13081197
Alignment:
Q  246 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagg 302  Q
    ||||||||||||||||||||||  |||| |||||| ||||| |||| ||||||||||    
T  13081253 ttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaagg 13081197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 13351022 - 13351081
Alignment:
Q  11 accatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaag 70  Q
    ||||||||||||||||  | |||  |||||||||| |||||| |||||||||||||||||    
T  13351022 accatatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaaag 13351081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 30906183 - 30906245
Alignment:
Q  11 accatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    ||||||||||||||||  | |||  |||||||||| |||||||||||||||||||||||||||    
T  30906183 accatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaaggtg 30906245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 1400751 - 1400684
Alignment:
Q  6 cacacaccatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    |||| ||||||||||||||||  | |||  ||||||| || |||||||||||||||||||||| ||||    
T  1400751 cacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaagggtg 1400684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 33667452 - 33667514
Alignment:
Q  11 accatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    ||||||||||||||||  |||||  |||||||||| |||||||| ||||||| ||||| ||||    
T  33667452 accatatatttggttaactaaaatttttcagagtggtacaaaagagtgtacatattaagggtg 33667514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 7915649 - 7915612
Alignment:
Q  36 tttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7915649 tttcagagtgatacaaaagggtgtacacattaaaggtg 7915612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 9068537 - 9068599
Alignment:
Q  6 cacacaccatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaa 68  Q
    |||| |||||||||||| |||  |||||  |||||||||| ||||||||||||||||||||||    
T  9068537 cacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaa 9068599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 23595102 - 23595069
Alignment:
Q  40 agagtgatacaaaagggtgtacacattaaaggtg 73  Q
    ||||||||||||||||||||||||||||||||||    
T  23595102 agagtgatacaaaagggtgtacacattaaaggtg 23595069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 3222410 - 3222347
Alignment:
Q  9 acaccatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    ||||||||||||||||||||| |||  ||| ||||| |||| |||||||||||||||||| ||||    
T  3222410 acaccatatatttggttatttgaaatttttaagagtaatac-aaagggtgtacacattaagggtg 3222347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 22608343 - 22608281
Alignment:
Q  6 cacacaccatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaa 68  Q
    |||| ||||||||||||||||  |||||  ||| |||||| |||||| |||||||||||||||    
T  22608343 cacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaa 22608281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 19280329 - 19280396
Alignment:
Q  6 cacacaccatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    |||| |||||||||||| |||  |||||| |||||||||| |||||| ||||||||||||||| ||||    
T  19280329 cacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtg 19280396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 11501290 - 11501244
Alignment:
Q  6 cacacaccatatatttggttatttaaaaaatttcagagtgatacaaa 52  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||||||    
T  11501290 cacagaccatatatttggttatttgaaaattttcagagtggtacaaa 11501244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 11509875 - 11509823
Alignment:
Q  16 atatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaa 68  Q
    |||||||||||||| |||  ||| |||||| |||||| |||||||||||||||    
T  11509875 atatttggttatttgaaatttttaagagtggtacaaaggggtgtacacattaa 11509823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 28805150 - 28805217
Alignment:
Q  6 cacacaccatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    |||| ||||||||||||||||  | |||  ||||||||||||||||| |||| |||||||||| ||||    
T  28805150 cacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtg 28805217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 32964917 - 32964950
Alignment:
Q  40 agagtgatacaaaagggtgtacacattaaaggtg 73  Q
    ||||||||||||||||||||| ||||||||||||    
T  32964917 agagtgatacaaaagggtgtatacattaaaggtg 32964950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 17633319 - 17633252
Alignment:
Q  6 cacacaccatatatttggttatttaaaaaatttcagagtgatacaaaagggtgtacacattaaaggtg 73  Q
    |||| ||||||||||||||||  |||||  |||| ||||| |||||| | ||||||||||||||||||    
T  17633319 cacagaccatatatttggttaactaaaatttttcggagtggtacaaatgagtgtacacattaaaggtg 17633252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University