View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_56 (Length: 319)

Name: NF9183_low_56
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_56
NF9183_low_56
[»] chr4 (7 HSPs)
chr4 (10-300)||(35335547-35335837)
chr4 (1-223)||(35335406-35335628)
chr4 (4-223)||(35335277-35335496)
chr4 (10-239)||(16591879-16592096)
chr4 (142-239)||(16602449-16602546)
chr4 (10-87)||(16602469-16602546)
chr4 (3-91)||(35335672-35335760)
[»] chr5 (2 HSPs)
chr5 (178-266)||(20964065-20964153)
chr5 (193-244)||(20963991-20964042)
[»] chr3 (2 HSPs)
chr3 (168-248)||(3175712-3175792)
chr3 (178-265)||(3175908-3175995)
[»] chr1 (4 HSPs)
chr1 (193-244)||(24541211-24541262)
chr1 (183-265)||(24540922-24541004)
chr1 (48-94)||(24541009-24541055)
chr1 (168-265)||(24541090-24541187)
[»] chr2 (1 HSPs)
chr2 (183-265)||(41524854-41524936)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 35335547 - 35335837
Alignment:
Q  10 gatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggaggatgaattggaacatgttt 109  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  35335547 gatgtgttggaggttgaataggggaatgagcaggagtgtgttgatgacggtgatgggttggaggtttagcatggtgaggaggatgaactggaacatgttt 35335646  T
Q  110 gtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggttta 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  35335647 gtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggcgtgagcaggaggatgttgatgatggcgatgggttgggggttta 35335746  T
Q  210 gtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtgaaggattgtgatggtagtggtgatgcgatttagccg 300  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||    
T  35335747 gtatgatgaggagggtgtaaaggagcgtgaacatgggaacgagaaggggttggtgaaggattgtgatgatagtggtgaggggatttagccg 35335837  T

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Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35335406 - 35335628
Alignment:
Q  1 gctggtggtgatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggaggatgaattgg 100  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  35335406 gctggtggtgatgcgttggaggttgaacaggggaatgagtaggagggtgttgatggcgatgatgggttggaggtttagcatgatgaggaggatgaactgg 35335505  T
Q  101 aacatgtttgtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggtt 200  Q
    |||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||| |||||  ||||||||||  ||||||||| |  ||||||||    
T  35335506 aacatgtttgtgaataggagcatgagcaggagagtgatggcgatgtgttggaggttgaataggggaatgagcaggagtgtgttgatgacggtgatgggtt 35335605  T
Q  201 gggggtttagtatgatgaggagg 223  Q
    || ||||||| ||| ||||||||    
T  35335606 ggaggtttagcatggtgaggagg 35335628  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 35335277 - 35335496
Alignment:
Q  4 ggtggtgatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggaggatgaattggaac 103  Q
    |||||||||| ||||| ||||||| | | | |||||   ||||| ||||||||  |||||| ||||||||||| |||||  |||||||||| | ||||||    
T  35335277 ggtggtgatgtgttggtggttgaataggcgcatgagttagagggcgttgatggttgtgatgagttggaggttttgcatggcgaggaggatgtactggaac 35335376  T
Q  104 atgtttgtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttggg 203  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||  |||| |||||| ||||||||  || ||||||||||     
T  35335377 atgtttgtgaacaggggcatgagcaggaggctggtggtgatgcgttggaggttgaacaggggaatgagtaggagggtgttgatggcgatgatgggttgga 35335476  T
Q  204 ggtttagtatgatgaggagg 223  Q
    ||||||| ||||||||||||    
T  35335477 ggtttagcatgatgaggagg 35335496  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 16592096 - 16591879
Alignment:
Q  10 gatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggaggatgaattggaacatgttt 109  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| || | ||| ||||     ||||    || |     
T  16592096 gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtggtgatgggttggaggtttaacagggtgacgagg-----ttgg----tgatg 16592006  T
Q  110 gtgaacaggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggttta 209  Q
     |||| ||||||||||| |||||   |||| ||||| | || |||||||| |||||  ||||||||||| ||||| || ||  || ||||||| ||||||    
T  16592005 atgaataggggcatgagaaggag---ggtgttgatgggatgaaggttgaagaggggcatgagcaggagggtgttggtggtggtgacgggttggaggttta 16591909  T
Q  210 gtatgatgaggagggtgtaaaggagtgtga 239  Q
    | | | |||| |||||||||||||||||||    
T  16591908 gcagggtgagaagggtgtaaaggagtgtga 16591879  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 16602546 - 16602449
Alignment:
Q  142 gatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtga 239  Q
    |||| |||||||||||||||||||  ||||||||||| |||||||| |   |||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  16602546 gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtagggatgggttggaggtttagcatggtgagaagggtgtaaaggagtgtga 16602449  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 16602546 - 16602469
Alignment:
Q  10 gatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgag 87  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||  | |||||||||||||||||||||| ||||    
T  16602546 gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtagggatgggttggaggtttagcatggtgag 16602469  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 35335672 - 35335760
Alignment:
Q  3 tggtggtgatgcgttggaggttgaacaagggaatgagcaggagggtgttgatggcggtgatgggttggaggtttagcatgatgaggagg 91  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||| ||||||||  || |||||||||| ||||||| ||||||||||||    
T  35335672 tggtggtgatgtgttggaggttgaacaggggcgtgagcaggaggatgttgatgatggcgatgggttgggggtttagtatgatgaggagg 35335760  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 20964153 - 20964065
Alignment:
Q  178 gatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtgaa 266  Q
    |||| ||||||||| |||||||||||||||| | | | ||| |||| |||| ||||||||||||||||||| ||| ||||| |||||||    
T  20964153 gatgatgatgatgatgatgggttgggggttttgcagggtgacgaggatgtataggagtgtgaacatgggaaggagtaggggatggtgaa 20964065  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 20964042 - 20963991
Alignment:
Q  193 gatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatg 244  Q
    ||||||| |||||||||| | | |||||||| ||||||||||||||||||||    
T  20964042 gatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatg 20963991  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 3175712 - 3175792
Alignment:
Q  168 tgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaa 248  Q
    ||||||||||  || ||||||||| |||||||||||||||| | | | ||| || | ||||||||||||||||||||||||    
T  3175712 tgagcaggagagtgatgatgatgatgatgggttgggggttttgcagggtgacgatgatgtaaaggagtgtgaacatgggaa 3175792  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 3175908 - 3175995
Alignment:
Q  178 gatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 265  Q
    |||| ||||||||| |||||||||| ||||| | | ||||| |||| |||||||||||||||||||| ||| ||| | ||| ||||||    
T  3175908 gatgatgatgatgatgatgggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatgagaaggagcaagggatggtga 3175995  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 24541211 - 24541262
Alignment:
Q  193 gatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatg 244  Q
    ||||||| |||||||||| | | |||||||| ||||||||||||||||||||    
T  24541211 gatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatg 24541262  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 24540922 - 24541004
Alignment:
Q  183 tgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 265  Q
    |||||||||  |||||| |||||||| | | | ||| |||| |||||||||||||||||||||||| | | ||||| ||||||    
T  24540922 tgatgatgataatgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcaggggatggtga 24541004  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 24541009 - 24541055
Alignment:
Q  48 tgttgatggcggtgatgggttggaggtttagcatgatgaggaggatg 94  Q
    ||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  24541009 tgttggtggcggtgatgggttggaggtttggcagggtgaggaggatg 24541055  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 24541090 - 24541187
Alignment:
Q  168 tgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 265  Q
    ||||||||||  ||||| |||||| |||| ||||||||||| |   | ||| |||| |||||||||| ||||||||||||| | | ||||| ||||||    
T  24541090 tgagcaggagagtgttgttgatgatgatgagttgggggttttgctgggtgacgaggatgtaaaggagggtgaacatgggaaggcgtaggggatggtga 24541187  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 41524854 - 41524936
Alignment:
Q  183 tgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 265  Q
    |||||| || |||||||||||||||| | | | ||| |||| | ||||||||| |||||||||||| ||| ||||| ||||||    
T  41524854 tgatgacgatgatgggttgggggttttgcagggtgacgaggatataaaggagtatgaacatgggaaggagcaggggatggtga 41524936  T

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