View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9183_low_63 (Length: 294)
Name: NF9183_low_63
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_63 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 41738548 - 41738689
Alignment:
| Q |
136 |
aaggatatataagactgaatattggcagcaaagaattaacaaacaagtaatttcagtatcacaaagatgagaattttatgatgagtagtcacataaaaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41738548 |
aaggatatataagactgaatattggcagcaaagaattaacaaacaagtaatttcagtatcacaaagatgagaattttatgatgagtagtcacataaaaca |
41738647 |
T |
|
| Q |
236 |
agataggtttaccaatacaattataagaggaaaaaggcttaa |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41738648 |
agataggtttaccaatacaattataagaggaaaaaggcttaa |
41738689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 41738691 - 41738719
Alignment:
| Q |
266 |
aaaaaggcttaaagcatccatgtaagcaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41738691 |
aaaaaggcttaaagcatccatgtaagcaa |
41738719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 41738725 - 41738753
Alignment:
| Q |
266 |
aaaaaggcttaaagcatccatgtaagcaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41738725 |
aaaaaggcttaaagcatccatgtaagcaa |
41738753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 4603471 - 4603610
Alignment:
| Q |
19 |
accataggatctaaataggatggttgaaatgaaagaacatttagggtataatcagagctagagaaaagcatcactcgggttaaaaggaaaaatttagcac |
118 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4603471 |
accataagatctaaataggatggttgagatgaaagaaagtttagggtataatcag--ctacagaaaagcatcactcaggttaaaaggaaaaatttagcac |
4603568 |
T |
|
| Q |
119 |
acaattagaaaatatacaaggatatataagactgaatattgg |
160 |
Q |
| |
|
||||||| ||| || |||| |||||| |||||||||| |||| |
|
|
| T |
4603569 |
acaattataaactacacaatgatatacaagactgaatgttgg |
4603610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University