View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_64 (Length: 287)
Name: NF9183_low_64
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 30079379 - 30079131
Alignment:
| Q |
17 |
acatcatgaatatcattgccaacttccaagcacattgaatgagaaatgaaaagtgaaattaccatagcttgtccaagacctaaaacatcccatctttcag |
116 |
Q |
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| T |
30079379 |
acatcatgaatatcattgccaacttccaagcacattgaatgagaaatgaaaagtgaaattaccatagcttgtccaagacctaaaacatcccatctttcag |
30079280 |
T |
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| Q |
117 |
gaaaaacaaaagaactaacacacccttcttcttcatcatcatcctccacttcatcttcatcaccagccctagtcctaatttgttgttcatcatcttcttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079279 |
gaaaaacaaaagaactaacacacccttcttcttcatcatcatcctccacttcatcttcatcaccagccctagtcctaatttgttgttcatcatcttcttc |
30079180 |
T |
|
| Q |
217 |
ttcatcatggcttctttgactcatactttcaaattcagcacctccacca |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079179 |
ttcatcatggcttctttgactcatactttcaaattcagcacctccacca |
30079131 |
T |
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