View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_67 (Length: 278)
Name: NF9183_low_67
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 10983633 - 10983379
Alignment:
| Q |
8 |
tggtgtttaatagcatttacatgaaaagtgcttttgtagtatgcatttttacgctttggaataagtattttgaatagaatttaatagcactttcatttta |
107 |
Q |
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| T |
10983633 |
tggtgtttaatagcattttcatgaaaagtgctattgtagtatgcatttttacgctttggaataagtattttgaatagaatttaatagcactttcatttta |
10983534 |
T |
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| Q |
108 |
aagtgctaacatatgatgtaactttaatagcaatttctctgtacaaagtgctattaaaaggctaactttttcaatnnnnnnnnttaagcgtaacaaatat |
207 |
Q |
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| T |
10983533 |
aagtgctaacatatgatgtaactttaatagcaatt--tctgtacaaagtgctattaaaaggctaactttttctataaaaaaaattacgcgtaacatatat |
10983436 |
T |
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| Q |
208 |
atcac---taggataggtttgtaatccaaatgcagctatgtactacattccaatttc |
261 |
Q |
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| T |
10983435 |
atcactagtaggataggtttgtaatccaaatgcagctatatactacattccaatttc |
10983379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 18758090 - 18758344
Alignment:
| Q |
8 |
tggtgtttaatagcatttacatgaaaagtgcttttgtagtatgcatttttacgctttggaataagtattttgaatagaatttaatagcactttcatttta |
107 |
Q |
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| T |
18758090 |
tggtgtttaatagcattttcatgaaaagtgctattgtagtatgcatttttacgctttggaataagtattttgaatagaatttaatagcactttcatttta |
18758189 |
T |
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| Q |
108 |
aagtgctaacatatgatgtaactttaatagcaatttctctgtacaaagtgctattaaaaggctaactttttcaatnnnnnnnnttaagcgtaacaaatat |
207 |
Q |
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| T |
18758190 |
aagtgctaacatatgatgtaactttaatagcaatt--tctgtacaaagtgctattaaaaggctaactttttgtgtaaaaaaaattacgcgtaacatatat |
18758287 |
T |
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| Q |
208 |
atcac---taggataggtttgtaatccaaatgcagctatgtactacattccaatttc |
261 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18758288 |
atcactagtaggataggtttgtaatccaaatgcagctatatactacattccaatttc |
18758344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 16318856 - 16318748
Alignment:
| Q |
61 |
ctttggaataagtattttgaatagaatttaatagcactttcattttaaagtgctaacatatgatgtaactttaatagcaatttctctgtacaaagtgcta |
160 |
Q |
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| T |
16318856 |
ctttgaaataggtattttgaataggatttattagcactttc-ttttaaagtgctaacatatgatgcaactttaatagcaatt--tctgaacaaagcgcaa |
16318760 |
T |
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| Q |
161 |
ttaaaaggctaa |
172 |
Q |
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| T |
16318759 |
ttaaaaggctaa |
16318748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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