View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9183_low_70 (Length: 272)
Name: NF9183_low_70
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_70 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 24998170 - 24997991
Alignment:
| Q |
1 |
tccttaaaccatagttaaggaccatggttaaatgtttaaatagttaagggtacgcattacatggtagactctcaggggattgaaaacagaaaagaaacgg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24998170 |
tccttgaaccatagttaaggaccatggttaaatgtttaaatagttaagggtgcgcattacatggtagactatcaggggattgaaaacagaaaagaaacgg |
24998071 |
T |
|
| Q |
101 |
gtagagagaaagagagatagattagtgtggtggataagggtgcg----ttgtacatacatgaaccaggagactcaagcat |
176 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
24998070 |
gtagagagaaagagaaatagattagtgtggtggataagggtgcgctcactgtacatacatgaaccaggaaactcaagcat |
24997991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 24997956 - 24997859
Alignment:
| Q |
157 |
gaaccaggagactcaagcatgagaacaaatgtcactcacgtagtggaaattggcatgaaagagcgaggaagtagtataagcaagcttgacggtggaaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
24997956 |
gaaccaggagactcaagcatgagaacaaatgtcactcatgtagtggaaattggcatgaaagagcgaagtagtagtataagcaagcttgacagtggaaa |
24997859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 24998202 - 24998358
Alignment:
| Q |
54 |
gcattacatggtagactctcaggg-gattgaaaacagaaaagaaacgggtagagagaaagagagatagattagtgtggtggataagggtgcgt----tgt |
148 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||| | | |
|
|
| T |
24998202 |
gcattacatggtggactctcagtgagattgaaaacagaaaagaaacgggt--------agggagggagattagtgtggtagataagggtgcattcactac |
24998293 |
T |
|
| Q |
149 |
acatacatgaaccag-gagactcaagcatgagaacaaatgtcactcacgtagtggaaattggcat |
212 |
Q |
| |
|
||||||||||||| | ||||||||||||||| |||||||| | |||||| | ||||||||||||| |
|
|
| T |
24998294 |
acatacatgaaccggcgagactcaagcatgaaaacaaatgacgctcacgcaatggaaattggcat |
24998358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University