View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_72 (Length: 262)

Name: NF9183_low_72
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_72
NF9183_low_72
[»] chr2 (7 HSPs)
chr2 (12-262)||(8148254-8148503)
chr2 (13-258)||(8169078-8169327)
chr2 (12-262)||(8175290-8175539)
chr2 (119-205)||(8150841-8150927)
chr2 (119-223)||(8177293-8177398)
chr2 (126-205)||(8182932-8183011)
chr2 (119-205)||(8144620-8144706)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 8148254 - 8148503
Alignment:
Q  12 agtaacattgttgatgtgtgtgtgacatttaatttttctgcaaatagcttttagctcagttgttcataacttaagttgataaaatgcttgagtcgtaaac 111  Q
    |||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8148254 agtaacattgttcatgtgtgtgtgacatttagtatttctgcaaatagcttt-agctcagttgttcataacttaagttgataaaatgcttgagtcgtaaac 8148352  T
Q  112 atagcgatgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatatattatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8148353 atagcgatgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttggttagttacatatattatg 8148452  T
Q  212 cctcgagtctctaaaaacatgtttacactagcgggctgtttccagaagcag 262  Q
    ||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  8148453 cctagagtctctaaacaaatgtttacactagcgggctgtttccagaagcag 8148503  T

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Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 8169078 - 8169327
Alignment:
Q  13 gtaacattgttgatgtgtgtgtgacatttaatttttctgcaaatagcttttagctcagttgttcataacttaagttgataaaatgcttgagtcgtaaa-- 110  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||       
T  8169078 gtaacattgttgatgtgtgtgttacatttagtatttctgcaaatagcatc-agctcagttgttcataacttaagtttataaaatgcttgagtcgtaacgt 8169176  T
Q  111 ---catagcgatgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatatat 207  Q
       ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  8169177 aagcatagcgatgtgaatgaatgagagacgaggatttcaactgtttgatattaatgtcccctcgtgacttccttgctgattgttggttagttacatatat 8169276  T
Q  208 tatgcctcgagtctctaaaaacatgtttacactagcgggctgtttccagaa 258  Q
    ||||||| ||||||||||| | || ||||||||| | |||  |||||||||    
T  8169277 tatgcctagagtctctaaacaaatatttacactaacaggcgatttccagaa 8169327  T

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Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 8175290 - 8175539
Alignment:
Q  12 agtaacattgttgatgtgtgtgtgacatttaatttttctgcaaatagcttttagctcagttgttcataacttaagttgataaaatgcttgagtcgtaaac 111  Q
    |||||||||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| ||    
T  8175290 agtaacattgttcatgtgtgtgtgacatttagtatttctgcaaatagcttt-agctcagttgttcataacttaagttgataaaatgctcgggtcgtatac 8175388  T
Q  112 atagcgatgtgaatgaatgagagacgaggatttcaactgtttgataatt-ctgtcccctcttgacttccttgctgattgttgtttagttacatatattat 210  Q
    || || ||||| |||||||||||| ||||||| ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8175389 atcgcaatgtgtatgaatgagagatgaggattccaactgtttgatatttgctgtcccctcgtgacttccttgctgattgttgtttagttacatatattat 8175488  T
Q  211 gcctcgagtctctaaaaacatgtttacactagcgggctgtttccagaagcag 262  Q
    |  | ||||||||||| | || ||||| ||||| |||  |||||||||||||    
T  8175489 gaat-gagtctctaaacaaatatttaccctagcaggcgatttccagaagcag 8175539  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 8150841 - 8150927
Alignment:
Q  119 tgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatat 205  Q
    |||| |||||||||||| |||||||| |||||||||||  | || | ||||| ||| |||||||| |||||||||||| | ||||||    
T  8150841 tgtgtatgaatgagagatgaggatttgaactgtttgattttgctttaccctcctgatttccttgccgattgttgtttaatgacatat 8150927  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 8177293 - 8177398
Alignment:
Q  119 tgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatatat-tatgcctcga 217  Q
    |||| |||||||||||  |||||||| ||||||||||||   || | ||  ||| | |||||||| ||||||||||||||||||||| |  |||||||||    
T  8177293 tgtgtatgaatgagaggtgaggatttgaactgtttgatatcactttgcctgctttatttccttgccgattgttgtttagttacatatttagatgcctcga 8177392  T
Q  218 gtctct 223  Q
    ||||||    
T  8177393 gtctct 8177398  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 8182932 - 8183011
Alignment:
Q  126 gaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatat 205  Q
    |||||||||| |||||||| |||||||||||  | || | ||||| ||| |||||||| |||||||||||| | ||||||    
T  8182932 gaatgagagatgaggatttgaactgtttgattttgctttaccctcctgatttccttgccgattgttgtttaatgacatat 8183011  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 8144620 - 8144706
Alignment:
Q  119 tgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatat 205  Q
    |||| |||||||||||| |||||||| |||||||||||  | || | ||||| ||| ||||||||  ||||||||||| | ||||||    
T  8144620 tgtgtatgaatgagagatgaggatttgaactgtttgattttgctttaccctcctgatttccttgcctattgttgtttaatgacatat 8144706  T

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