View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_75 (Length: 242)

Name: NF9183_low_75
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_75
NF9183_low_75
[»] chr4 (6 HSPs)
chr4 (40-223)||(35335654-35335837)
chr4 (40-146)||(35335390-35335496)
chr4 (43-146)||(35335525-35335628)
chr4 (65-162)||(16602449-16602546)
chr4 (65-132)||(16592029-16592096)
chr4 (40-162)||(16591879-16591998)
[»] chr5 (2 HSPs)
chr5 (101-189)||(20964065-20964153)
chr5 (116-167)||(20963991-20964042)
[»] chr3 (2 HSPs)
chr3 (91-171)||(3175712-3175792)
chr3 (101-188)||(3175908-3175995)
[»] chr7 (1 HSPs)
chr7 (12-43)||(12601143-12601174)
[»] chr1 (3 HSPs)
chr1 (116-167)||(24541211-24541262)
chr1 (106-188)||(24540922-24541004)
chr1 (91-188)||(24541090-24541187)
[»] chr2 (1 HSPs)
chr2 (106-188)||(41524854-41524936)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 35335654 - 35335837
Alignment:
Q  40 ggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgat 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35335654 ggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggcgtgagcaggaggatgttgatgatggcgatgggttgggggtttagtatgat 35335753  T
Q  140 gaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtgaaggattgtgatggtagtggtgatgcgatttagccg 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||    
T  35335754 gaggagggtgtaaaggagcgtgaacatgggaacgagaaggggttggtgaaggattgtgatgatagtggtgaggggatttagccg 35335837  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 35335390 - 35335496
Alignment:
Q  40 ggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgat 139  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||||||  |||| |||||| ||||||||  || |||||||||| ||||||| |||||    
T  35335390 ggggcatgagcaggaggctggtggtgatgcgttggaggttgaacaggggaatgagtaggagggtgttgatggcgatgatgggttggaggtttagcatgat 35335489  T
Q  140 gaggagg 146  Q
    |||||||    
T  35335490 gaggagg 35335496  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 35335525 - 35335628
Alignment:
Q  43 gcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgag 142  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||  ||||||||||  ||||||||| |  |||||||||| ||||||| ||| ||||    
T  35335525 gcatgagcaggagagtgatggcgatgtgttggaggttgaataggggaatgagcaggagtgtgttgatgacggtgatgggttggaggtttagcatggtgag 35335624  T
Q  143 gagg 146  Q
    ||||    
T  35335625 gagg 35335628  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 16602546 - 16602449
Alignment:
Q  65 gatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtga 162  Q
    |||| |||||||||||||||||||  ||||||||||| |||||||| |   |||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  16602546 gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtagggatgggttggaggtttagcatggtgagaagggtgtaaaggagtgtga 16602449  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 16592096 - 16592029
Alignment:
Q  65 gatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggttta 132  Q
    |||| |||||||||||||||||||  ||||||||||| |||||||| ||  |||||||||| ||||||    
T  16592096 gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtggtgatgggttggaggttta 16592029  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 16591998 - 16591879
Alignment:
Q  40 ggggcatgagcaggagagtggtggtgatgtgttggaggttgaacaggggtgtgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgat 139  Q
    |||||||||| |||||   |||| ||||| | || |||||||| |||||  ||||||||||| ||||| || ||  || ||||||| ||||||| | | |    
T  16591998 ggggcatgagaaggag---ggtgttgatgggatgaaggttgaagaggggcatgagcaggagggtgttggtggtggtgacgggttggaggtttagcagggt 16591902  T
Q  140 gaggagggtgtaaaggagtgtga 162  Q
    ||| |||||||||||||||||||    
T  16591901 gagaagggtgtaaaggagtgtga 16591879  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 20964153 - 20964065
Alignment:
Q  101 gatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtgaa 189  Q
    |||| ||||||||| |||||||||||||||| | | | ||| |||| |||| ||||||||||||||||||| ||| ||||| |||||||    
T  20964153 gatgatgatgatgatgatgggttgggggttttgcagggtgacgaggatgtataggagtgtgaacatgggaaggagtaggggatggtgaa 20964065  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 20964042 - 20963991
Alignment:
Q  116 gatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatg 167  Q
    ||||||| |||||||||| | | |||||||| ||||||||||||||||||||    
T  20964042 gatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatg 20963991  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 3175712 - 3175792
Alignment:
Q  91 tgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaa 171  Q
    ||||||||||  || ||||||||| |||||||||||||||| | | | ||| || | ||||||||||||||||||||||||    
T  3175712 tgagcaggagagtgatgatgatgatgatgggttgggggttttgcagggtgacgatgatgtaaaggagtgtgaacatgggaa 3175792  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 3175908 - 3175995
Alignment:
Q  101 gatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 188  Q
    |||| ||||||||| |||||||||| ||||| | | ||||| |||| |||||||||||||||||||| ||| ||| | ||| ||||||    
T  3175908 gatgatgatgatgatgatgggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatgagaaggagcaagggatggtga 3175995  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 12601143 - 12601174
Alignment:
Q  12 agagaggacgggtagaagaggggaaggtgggg 43  Q
    ||||||||||||||||||||||||||||||||    
T  12601143 agagaggacgggtagaagaggggaaggtgggg 12601174  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 24541211 - 24541262
Alignment:
Q  116 gatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatg 167  Q
    ||||||| |||||||||| | | |||||||| ||||||||||||||||||||    
T  24541211 gatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatg 24541262  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 24540922 - 24541004
Alignment:
Q  106 tgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 188  Q
    |||||||||  |||||| |||||||| | | | ||| |||| |||||||||||||||||||||||| | | ||||| ||||||    
T  24540922 tgatgatgataatgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcaggggatggtga 24541004  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 24541090 - 24541187
Alignment:
Q  91 tgagcaggaggatgttgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 188  Q
    ||||||||||  ||||| |||||| |||| ||||||||||| |   | ||| |||| |||||||||| ||||||||||||| | | ||||| ||||||    
T  24541090 tgagcaggagagtgttgttgatgatgatgagttgggggttttgctgggtgacgaggatgtaaaggagggtgaacatgggaaggcgtaggggatggtga 24541187  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 41524854 - 41524936
Alignment:
Q  106 tgatgatgacgatgggttgggggtttagtatgatgaggagggtgtaaaggagtgtgaacatgggaacgagaaggggttggtga 188  Q
    |||||| || |||||||||||||||| | | | ||| |||| | ||||||||| |||||||||||| ||| ||||| ||||||    
T  41524854 tgatgacgatgatgggttgggggttttgcagggtgacgaggatataaaggagtatgaacatgggaaggagcaggggatggtga 41524936  T

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