View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9183_low_77 (Length: 239)
Name: NF9183_low_77
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9183_low_77 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 82673 - 82453
Alignment:
| Q |
1 |
actccgctactagctacaaccactttacccaagaggtacattgtattttttacaatcttccaaatttatattttggaaattcctctcttacactattcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
82673 |
actccgctactagctacaaccactttacccaagaggtacattgtattttttacaatcttccaaatttatattttggaaattcctctcttacactattcca |
82574 |
T |
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| Q |
101 |
tcattttacagatatagaaaccttatttttggttcatggtactgagaaatatgcacataagaacatgttacggtttaaaaaattgccattaatacgatta |
200 |
Q |
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| T |
82573 |
tcattttacagatatagaaaccttatttttggttcatggtactgagaaatatgcacataagaacatgttacggtttaaaaaattgccattaatacgatta |
82474 |
T |
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| Q |
201 |
tcgacagaagctaggtgatgc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
82473 |
tcgacagaagctaggtgatgc |
82453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40883611 - 40883831
Alignment:
| Q |
1 |
actccgctactagctacaaccactttacccaagaggtacattgtattttttacaatcttccaaatttatattttggaaattcctctcttacactattcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40883611 |
actccgctactagctacaaccactttacccaagaggtacattgtattttttacaatcttccaaatttatattttggaaattcctctcttacactattcca |
40883710 |
T |
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| Q |
101 |
tcattttacagatatagaaaccttatttttggttcatggtactgagaaatatgcacataagaacatgttacggtttaaaaaattgccattaatacgatta |
200 |
Q |
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| T |
40883711 |
tcattttacagatatagaaaccttatttttggttcatggtactgagaaatatgcacataagaacatgttacggtttaaaaaattgccattaatacgatta |
40883810 |
T |
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| Q |
201 |
tcgacagaagctaggtgatgc |
221 |
Q |
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| T |
40883811 |
tcgacagaagctaggtgatgc |
40883831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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