View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_79 (Length: 231)

Name: NF9183_low_79
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_79
NF9183_low_79
[»] chr6 (2 HSPs)
chr6 (1-180)||(1224005-1224184)
chr6 (186-231)||(1223972-1224017)
[»] chr7 (2 HSPs)
chr7 (55-133)||(13825443-13825521)
chr7 (196-231)||(24472510-24472545)
[»] chr8 (1 HSPs)
chr8 (196-231)||(44144872-44144907)
[»] chr3 (3 HSPs)
chr3 (196-231)||(42793639-42793674)
chr3 (196-231)||(54813259-54813294)
chr3 (196-231)||(46427709-46427744)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 1224184 - 1224005
Alignment:
Q  1 agattaaataaaatggagttttgccactttgatcttaagcaaagttgatcaacaacttggtttgatatgcttttctaatttcagtttgaaaatatttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1224184 agattaaataaaatggagttttgccactttgatcttaagcaaagttgatcaacaacttggtttgatatgcttttctaatttcagtttgaaaatatttttc 1224085  T
Q  101 caaatagaaaaactaagtaaactaactccaaatgcttgaccaattaagtgactttgtagaggatataaagaaagtcattg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  1224084 caaatagaaaaactaagtaaactaactccaaatgcttgaccaattaagtgacttttcagaggatataaagaaagtcattg 1224005  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 1224017 - 1223972
Alignment:
Q  186 aagaaagtcattgccagattacactgttagtagggttcttgctctc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1224017 aagaaagtcattgccagattacactgttagtagggttcttgctctc 1223972  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 13825521 - 13825443
Alignment:
Q  55 acttggtttgatatgcttttctaatttcagtttgaaaatatttttccaaatagaaaaactaagtaaactaactccaaat 133  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  13825521 acttggtttgatatgtttttctaatttcagtttgaaaatatttttacaaatacaaaaactatgtaaactaactccaaat 13825443  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 24472510 - 24472545
Alignment:
Q  196 ttgccagattacactgttagtagggttcttgctctc 231  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24472510 ttgccagattacactgttagtagagttcttgctctc 24472545  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 44144872 - 44144907
Alignment:
Q  196 ttgccagattacactgttagtagggttcttgctctc 231  Q
    ||||||||||||||||||||||||||||||||||||    
T  44144872 ttgccagattacactgttagtagggttcttgctctc 44144907  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 42793639 - 42793674
Alignment:
Q  196 ttgccagattacactgttagtagggttcttgctctc 231  Q
    ||||||||||||||||||||||||||||||||||||    
T  42793639 ttgccagattacactgttagtagggttcttgctctc 42793674  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 54813294 - 54813259
Alignment:
Q  196 ttgccagattacactgttagtagggttcttgctctc 231  Q
    ||||||||||||||||||||||||||||||||||||    
T  54813294 ttgccagattacactgttagtagggttcttgctctc 54813259  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 46427709 - 46427744
Alignment:
Q  196 ttgccagattacactgttagtagggttcttgctctc 231  Q
    ||||||||||||| ||||||||||||||||||||||    
T  46427709 ttgccagattacattgttagtagggttcttgctctc 46427744  T

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