View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9183_low_81 (Length: 211)

Name: NF9183_low_81
Description: NF9183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9183_low_81
NF9183_low_81
[»] chr6 (6 HSPs)
chr6 (1-185)||(13038296-13038480)
chr6 (1-185)||(34950260-34950444)
chr6 (1-185)||(29436299-29436483)
chr6 (13-106)||(12303931-12304023)
chr6 (47-126)||(20386692-20386771)
chr6 (80-141)||(33554183-33554244)
[»] chr4 (9 HSPs)
chr4 (1-185)||(40760958-40761142)
chr4 (1-185)||(52918054-52918238)
chr4 (1-185)||(13721882-13722066)
chr4 (1-185)||(38989265-38989449)
chr4 (1-185)||(40691543-40691727)
chr4 (1-185)||(45658083-45658268)
chr4 (1-185)||(55610256-55610433)
chr4 (48-185)||(11649068-11649205)
chr4 (85-185)||(53270769-53270868)
[»] chr7 (11 HSPs)
chr7 (1-185)||(35583626-35583810)
chr7 (1-185)||(33851452-33851636)
chr7 (4-185)||(110074-110255)
chr7 (1-185)||(15031168-15031352)
chr7 (1-185)||(29330840-29331024)
chr7 (1-185)||(38000011-38000195)
chr7 (1-120)||(41792594-41792713)
chr7 (80-185)||(43747858-43747963)
chr7 (1-91)||(7253834-7253924)
chr7 (133-185)||(7254089-7254141)
chr7 (130-173)||(22203367-22203410)
[»] chr1 (13 HSPs)
chr1 (11-185)||(10221817-10221991)
chr1 (1-185)||(39599596-39599780)
chr1 (1-185)||(4852745-4852929)
chr1 (1-185)||(5748418-5748602)
chr1 (1-185)||(10311261-10311445)
chr1 (1-182)||(18277904-18278085)
chr1 (1-185)||(7198598-7198782)
chr1 (27-185)||(7563151-7563309)
chr1 (29-185)||(50890393-50890549)
chr1 (1-185)||(17384467-17384651)
chr1 (27-185)||(30516928-30517086)
chr1 (65-149)||(15499935-15500019)
chr1 (128-185)||(22334148-22334205)
[»] chr3 (12 HSPs)
chr3 (1-185)||(3940012-3940196)
chr3 (1-185)||(21449226-21449409)
chr3 (1-185)||(41973193-41973377)
chr3 (1-185)||(44206274-44206458)
chr3 (1-181)||(49325879-49326059)
chr3 (1-185)||(48063603-48063788)
chr3 (1-177)||(47373333-47373508)
chr3 (1-185)||(8484991-8485174)
chr3 (3-179)||(21978454-21978631)
chr3 (3-179)||(22000885-22001062)
chr3 (1-173)||(9331922-9332094)
chr3 (1-178)||(18877422-18877587)
[»] chr8 (6 HSPs)
chr8 (1-171)||(24832144-24832314)
chr8 (1-181)||(10298-10478)
chr8 (48-185)||(41836057-41836194)
chr8 (47-148)||(16796064-16796165)
chr8 (47-126)||(12191382-12191461)
chr8 (47-126)||(12435810-12435889)
[»] chr2 (9 HSPs)
chr2 (1-185)||(5462946-5463130)
chr2 (1-182)||(15111913-15112094)
chr2 (1-178)||(18964721-18964898)
chr2 (1-185)||(5936903-5937087)
chr2 (1-185)||(34949880-34950064)
chr2 (47-148)||(33946243-33946344)
chr2 (47-112)||(2734623-2734688)
chr2 (80-161)||(41255518-41255599)
chr2 (77-125)||(42014750-42014798)
[»] chr5 (9 HSPs)
chr5 (1-166)||(24854480-24854645)
chr5 (1-165)||(6431198-6431362)
chr5 (1-182)||(41614925-41615106)
chr5 (3-174)||(31470738-31470909)
chr5 (1-124)||(5342644-5342767)
chr5 (1-166)||(27949900-27950065)
chr5 (47-162)||(10133541-10133656)
chr5 (47-125)||(8241664-8241742)
chr5 (47-148)||(28443674-28443775)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-185)||(16878-17062)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 13038480 - 13038296
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |    
T  13038480 tactacaacggtggaacatcaccctgtctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaattcaaccgtcaactca 13038381  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||    
T  13038380 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccagatctcttcgcttcagccggat 13038296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 34950444 - 34950260
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||  || || ||||| ||||||||||||||||||||||| |    
T  34950444 tactacaacggtggaacaccaccccatctatttaggattcgagacgatgtcaccctctccgagctaaatgatgagctggatcaaatcaaccgtcaactca 34950345  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| ||||| | || |||||| || |||||||||||||||||||||||||    
T  34950344 accacaaagacacgaggagggtggtcggagttgaatatcgatgttcgttgtccgacacaaccggatctcttcgcttcagccggat 34950260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 29436483 - 29436299
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  |||||||||||  ||||||||| |||||||||||| |    
T  29436483 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagttggatcaaagcaaccgtcaactca 29436384  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||| ||| ||||||||||| | ||||||||||| ||||||  || |  |||||| |||||||||||||||||||||||||    
T  29436383 accacaaacacacgaggagggtggtcggagttgaatatcgatgtctgttgtttgactcaaccggatctcttcgcttcagccggat 29436299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 12303931 - 12304023
Alignment:
Q  13 ggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccaca 106  Q
    |||| |||||||  |||||||||||||||  || | |||||  |||| || ||||||||||| ||||||||||||||||||||||| |||||||    
T  12303931 ggaaaaccaccccatctgtttaggattcgcaacgacgtcactttctcggg-ctgaaggatgagctggatcaaatcaaccgtcaactcaaccaca 12304023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 20386692 - 20386771
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 126  Q
    ||||||| ||||||||  |||||||| | || |||||||||||||||||||| ||||| | |||||  ||||| ||||||    
T  20386692 atgtcacgctctccgggttgaaggatcagctagatcaaatcaaccgtcaactcaaccatagagacacaaggagagtggac 20386771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 33554183 - 33554244
Alignment:
Q  80 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattga 141  Q
    ||||||||||||||||||| ||||| | |||||  ||||| |||||||| ||||| ||||||    
T  33554183 atcaaatcaaccgtcaactcaaccatagagacacaaggagagtggacagtgttgattattga 33554244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 40760958 - 40761142
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |    
T  40760958 tactacaacggtggaacaccaccccatctgtttaggattcgagacaatgtcaccctctccgggctgaaggatgatttggatcaaatcaaccgtcaactca 40761057  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||| ||| ||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||||||    
T  40761058 accacaaagacacgaggagggttgacggagttcaatatcgatgtccattatccgacttagccgaatctcttcgcttcagccggat 40761142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 52918054 - 52918238
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  52918054 tactacaacggtggaacaccaccccatctgtttaggattcgagaggatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactca 52918153  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  52918154 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctctttgcttcagccggat 52918238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 13722066 - 13721882
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||  ||||||||| | ||||||||||||||||||||||| |    
T  13722066 tactacaacggtggaacaccaccccatctgtttaggattcgagatgatgtcaccctctccgagctgaaggataagctggatcaaatcaaccgtcaactca 13721967  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| ||||||| || ||||||||| |||||| |||||||||||| |||||    
T  13721966 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgtccgactcaaccggatatcttcgcttcagtcggat 13721882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 38989265 - 38989449
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||| | |||||||   ||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  38989265 tactacaacggtggaacaccaccccatctatctaggattaacgacgatgtaaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactca 38989364  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| || |||||| |||||||||||||||||||||||||    
T  38989365 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtctgactcatccggatctcttcgcttcagccggat 38989449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 40691543 - 40691727
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||| |||| |||||  ||||||||||||||||||| ||||||||||||||   ||||||||||| ||| ||||||||||||||||||| |    
T  40691543 tactacaacggtgtaacatcaccccatctgtttaggattcgagacgatgtcaccctctccaagctgaaggatgagctgaatcaaatcaaccgtcaactca 40691642  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| ||||||| || | ||||||| |||||||||||||||||||||||||    
T  40691643 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgttcgactcaaccggatctcttcgcttcagccggat 40691727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 45658083 - 45658268
Alignment:
Q  1 tactacaacggtggaacaccaccctg-tctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactt 99  Q
    ||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||     
T  45658083 tactacaacggtggaacaccacccccatctgtttaggattcgagacgatgtcaccctctcctggctgaaggatgagctggatcaaatcaaccgtcaactc 45658182  T
Q  100 aaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    ||||||| |||||    |||||||| | ||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||    
T  45658183 aaccacagagacacatagagggtggtcggagttgaatatcgatgtccattgtctgactcagccggatctcttcgctttagccggat 45658268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 55610256 - 55610433
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  | |||||||| ||| |||||||||||       | |    
T  55610256 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggttaaaggatgagctgaatcaaatcaac-------tca 55610348  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||    
T  55610349 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccaactcagtcggatctcttcgcttcagccggat 55610433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 11649205 - 11649068
Alignment:
Q  48 tgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcca 147  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||||||| ||||| ||||||||||| | | ||||||||| ||  ||||    
T  11649205 tgtcaccctcttcgggctgaaggatgagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggtcggtgttgaatatcgaattcca 11649106  T
Q  148 ttatccgactcagccggatctcttcgcttcagccggat 185  Q
    || ||||| |||||| ||||||| ||||||||||||||    
T  11649105 ttgtccgaatcagccagatctctacgcttcagccggat 11649068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 53270868 - 53270769
Alignment:
Q  85 atcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccgga 184  Q
    |||||||||||||| || |||| ||||| ||||| ||||| |  |||||||||| |||||||||| ||||||||| | ||| ||||||||||||||||||    
T  53270868 atcaaccgtcaactcaatcacagagacacgaggaaggtggtcgaagttgaatatcgatgtccattgtccgactcaactgga-ctcttcgcttcagccgga 53270770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 35583626 - 35583810
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| ||||||| |    
T  35583626 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccggactgaaggatgagttggatcaaatcaactgtcaactca 35583725  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||    
T  35583726 accacaaagacaagaggagggtggtcggagttgaatatcgatgtccattgtccgactcagctggatctcttcgctttagccggat 35583810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 33851636 - 33851452
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||||||||||||| |    
T  33851636 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccgtcaactca 33851537  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| ||| |||||| |||||||||||| ||||||||||||||| ||||||    
T  33851536 accacaaagacacgaggagggtggtcggagttgaatatcgatatccattgtccgactcagccagatctcttcgcttcatccggat 33851452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 110255 - 110074
Alignment:
Q  4 tacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaacc 103  Q
    |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  110255 tacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactcaacc 110156  T
Q  104 acaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    ||||||||| ||||||||||| | ||||||||||| |||||||||| ||||| ||||| | ||||||| |||||||||||||    
T  110155 acaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgaatcagcagaatctctttgcttcagccggat 110074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 15031168 - 15031352
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||   |||||||||| ||| ||||||||||| ||||||| |    
T  15031168 tactacaacggtggaacaccaacccatctgtttaggattcgagacgatgtcaccctctccgagatgaaggatgagctgaatcaaatcaactgtcaactca 15031267  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||    
T  15031268 accacaaagacacgaggagggtggtcagagttgaatatcgatgtccgttgtccgactcaaccggatctcttcgcttcagccggat 15031352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 29330840 - 29331024
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||| |||||| |    
T  29330840 tactacagcggtggaacaccaccccatctgtttaggattcgagacgatgccaccctctccgggctgaaggatgagctggatcaaatcaaccatcaactca 29330939  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    | |||||||||| ||||||||||| | ||||||||||| |||||||||  ||| ||||||||||||||| |||||||||| ||||    
T  29330940 atcacaaagacacgaggagggtggtcggagttgaatatcgatgtccatcgtccaactcagccggatctcatcgcttcagctggat 29331024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 38000195 - 38000011
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  | ||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||      
T  38000195 tactacaacggtggaacaccaccccatttgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactcg 38000096  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    | |||||||||| ||| |||||||   ||||||||||| ||||| |||| ||||||||||||  |||||||||||||||||||||    
T  38000095 aacacaaagacacgagcagggtggttggagttgaatatcgatgttcattgtccgactcagccatatctcttcgcttcagccggat 38000011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 41792713 - 41792594
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    |||||||||| |||||||||||||  | ||||||||||||||||| |||||||||||| ||| ||||||||||| || |||||||||||||||||||| |    
T  41792713 tactacaacgatggaacaccaccccatatgtttaggattcgagacgatgtcaccctcttcgggctgaaggatgagctagatcaaatcaaccgtcaactca 41792614  T
Q  101 accacaaagacaagaggagg 120  Q
    |||||||||||| |||||||    
T  41792613 accacaaagacacgaggagg 41792594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 43747858 - 43747963
Alignment:
Q  80 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 179  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | | ||||||||| |||||||||| |||||||||| |  |||||||||||||||    
T  43747858 atcaaatcaaccgtcaactcaaccacaaagacacgaggagggtggtcggggttgaatatcgatgtccattgtccgactcagtcaaatctcttcgcttcag 43747957  T
Q  180 ccggat 185  Q
    ||||||    
T  43747958 ccggat 43747963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7253834 - 7253924
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaacc 91  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||| |||||||||||  |||||||||| ||||    
T  7253834 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctcttcgggctgaaggatgagttggatcaaattaacc 7253924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 7254089 - 7254141
Alignment:
Q  133 gaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| ||||||    
T  7254089 gaatatcgatgtccattgtccgactcagccggatctcttcgcttcaaccggat 7254141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 22203367 - 22203410
Alignment:
Q  130 gttgaatattgatgtccattatccgactcagccggatctcttcg 173  Q
    ||||||||| | |||||||| |||||||||||||||||||||||    
T  22203367 gttgaatatcgttgtccattgtccgactcagccggatctcttcg 22203410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 10221817 - 10221991
Alignment:
Q  11 gtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaaga 110  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  10221817 gtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactcaaccacaaaga 10221916  T
Q  111 caagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    || ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  10221917 cacgaggagggtggtcggggttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 10221991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 39599780 - 39599596
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| |    
T  39599780 tactacaacggtggaacaccaccccgtttgtttaggatttgagacaatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccgtcaactca 39599681  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||| ||||| ||||||||||| | ||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||    
T  39599680 accacagagacacgaggagggtggtcggagttgaatatcgatgtccgttgtccgactcaaccggatctcttcgcttcagccggat 39599596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 4852929 - 4852745
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||||| ||||||| |    
T  4852929 tactagaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaactgtcaactca 4852830  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||| ||||| |||||||||||  |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  4852829 accacagagacacgaggagggtggttagagttgaatatcgatgtccattgtccgactcaaccggatctcttcgcttcagccggat 4852745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5748418 - 5748602
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    |||||||||||||||||||||||   ||||||||||||||||||| |||||||||||| ||  |||||||| || ||||||||||||||||||||| | |    
T  5748418 tactacaacggtggaacaccaccgcatctgtttaggattcgagacgatgtcaccctcttcgagctgaaggaggagctggatcaaatcaaccgtcaattca 5748517  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  5748518 accacaaagacacgaggagggtggttagagttgaatattgatgtccattgttcgactcagccggatctattcgcttcagccggat 5748602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 10311261 - 10311445
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||  |||||||||||||||  ||||||||||| ||||||||||||||||||||||| |    
T  10311261 tactacaactgtggaacaccaccccatctgtttaggattcgagatgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccgtcaactca 10311360  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||    
T  10311361 accacaaagacacgaggagggtggtcggagttgaatatcgatgtcctttgtctgactcatccggatctcttcgcttcagccggat 10311445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 18278085 - 18277904
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||   |||||||| || | |||||||||||||||||||| |    
T  18278085 tactacaacggtggaacaccaccccatctgtttaggattcgagactatgtcaccctctccgtgttgaaggattattttgatcaaatcaaccgtcaactca 18277986  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 182  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||    
T  18277985 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcatccggatatcttcgcttcagccg 18277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 7198598 - 7198782
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||| ||||  ||||||||||||| ||||| |||||||| ||||||  |||||||| ||   ||||||||||||||||||||| |    
T  7198598 tactacaacggtggaacactaccccatctgtttaggattggagacgatgtcaccatctccgagctgaaggacgagagggatcaaatcaaccgtcaactca 7198697  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    || ||||||||| ||||||||||| ||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||||||||    
T  7198698 actacaaagacacgaggagggtggtcagagttgaatatcgatgtccgttgtccgactcaaccggatctctttgcttcagccggat 7198782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 7563151 - 7563309
Alignment:
Q  27 tctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 126  Q
    ||||||||||||||   || |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||| |    
T  7563151 tctgtttaggattcacaacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactcaaccacagagacacgaggagggtggtc 7563250  T
Q  127 agagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
     | ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||    
T  7563251 ggtgttgaatatcgatgtccattgtccgactcagtcggatctcttcgcttcagccggat 7563309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 50890549 - 50890393
Alignment:
Q  29 tgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacag 128  Q
    |||||||||||||  || ||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| | |    
T  50890549 tgtttaggattcgcaacgatgtcaccctcactgggctgaaggatgatctggatcaaatcaaccgtcaactcaaccacagagacacgaggagggtggtctg 50890450  T
Q  129 agttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
     ||||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||    
T  50890449 tgttgaatatcgatgtcaattgtccgactcagccggatctcttcggttcagccggat 50890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 17384467 - 17384651
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||| ||||||||||  ||||||||||||| |  || ||||||||||||| || ||||||| ||| |||||||||||||| |||||| | |    
T  17384467 tactacaacggtgaaacaccaccccatctgtttaggatttgcaacgatgtcaccctctcagggctgaagggtgagctggatcaaatcaatcgtcaaatca 17384566  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||| ||||| ||||||||||| | | ||||||||| ||| ||||||  |||| ||| |||||||||||||||||||| ||||    
T  17384567 accacagagacacgaggagggtggtcggtgttgaatatcgatctccattgaccgaatcatccggatctcttcgcttcagcaggat 17384651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 30516928 - 30517086
Alignment:
Q  27 tctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 126  Q
    ||||||||||||||   || |||||||||||||| | || |||||| | ||||||||||||||| | ||||| ||||||| ||||| |||||||||||      
T  30516928 tctgtttaggattcacaacgatgtcaccctctccaggctaaaggatcagctggatcaaatcaactgccaactcaaccacagagacacgaggagggtggta 30517027  T
Q  127 agagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
     | ||||||||| |||||   || ||| ||||||    ||||||||| |||||||||||    
T  30517028 tgtgttgaatatcgatgtttgttgtccaactcagtttcatctcttcggttcagccggat 30517086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 15500019 - 15499935
Alignment:
Q  65 tgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccatt 149  Q
    |||||||| | ||| ||||||||||||||||||| |||||||||||||  |||||||||||| | ||||| ||| || |||||||    
T  15500019 tgaaggattagctgcatcaaatcaaccgtcaactcaaccacaaagacactaggagggtggacggtgttgagtatcgacgtccatt 15499935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 22334148 - 22334205
Alignment:
Q  128 gagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    ||||||||||| ||||||| || |||||||||  |||||||||||||||||| |||||    
T  22334148 gagttgaatatcgatgtccgttgtccgactcaatcggatctcttcgcttcagtcggat 22334205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 3940012 - 3940196
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||  |    
T  3940012 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatatcaccctctccggactgaaggatgagctggatcaaatcaaccgtcaacaca 3940111  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| ||||||||||||| || ||||||| |||||||||| ||||||||||| |||| |||||||    
T  3940112 accacaaagacacgaggagggtggtcagagttgaatatcgacgtccattgtccgactcagtcggatctcttcacttcggccggat 3940196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 21449226 - 21449409
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||| ||||||||||||| |  |||||||||||  |||||||||||||||| ||||| |    
T  21449226 tactacaacggtgga-caccaccccatctgtttaggattcgagacgatgtcaccctctctgagctgaaggatgagatggatcaaatcaaccgacaactca 21449324  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  21449325 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 21449409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 41973193 - 41973377
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||| |   |||||||| |||||||||| ||||| ||||||||||  |||||||||| ||||||||||||||||||||||| |    
T  41973193 tactacaacggtggaacaccatctcatctgtttaagattcgagacgatgtcgccctctccgggttgaaggatgagctggatcaaatcaaccgtcaactca 41973292  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| |||||||||||   ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  41973293 accacaaagacatgaggagggtggttggagttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 41973377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 44206274 - 44206458
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||||||||  |||||| |    
T  44206274 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaacaatcaactaa 44206373  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||    
T  44206374 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgtctgactcaaccggatctcttcgcttcagccggat 44206458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 49325879 - 49326059
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||  || |||||||| ||||||||||||||||||||||| |    
T  49325879 tactacaacggtggaacaccaccccatctgtttaggattcaagacgatgtcaccctctccgagcttaaggatgagctggatcaaatcaaccgtcaactca 49325978  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagcc 181  Q
    |||||||||||| ||||||||||| | ||||||||||| ||||| | || ||||||||| |||||||||||||||||||||    
T  49325979 accacaaagacacgaggagggtggtcggagttgaatatcgatgttcgttgtccgactcaaccggatctcttcgcttcagcc 49326059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 48063788 - 48063603
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||||||||||||| |    
T  48063788 tactacaacggtggaacaccatcccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccgtcaactca 48063689  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactc-agccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||  | ||||||||||| |||| || || |||||||| | |||||||||||||||||||||||||    
T  48063688 accacaaagacacgaggagggtgatcggagttgaatatcgatgcccgttgtccgactcaaaccggatctcttcgcttcagccggat 48063603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 47373333 - 47373508
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||||||| |    
T  47373333 tactacaacggtggaacaccaccca-tctgtttaggattcgagacgatgtcaccctctccgggttgaaggatgagctggatcaaatcaaccgtcaactca 47373431  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttc 177  Q
    |||||||||||| ||||||||||| | ||||||||||| ||| || ||| ||||||| ||  |||||||||||||||    
T  47373432 accacaaagacacgaggagggtggtcggagttgaatatcgatttctattgtccgacttagttggatctcttcgcttc 47373508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 8484991 - 8485174
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||| |||   ||||||||||||||||||| |||| ||||||||  | ||||||||||| ||||||||| ||||||||||||| |    
T  8484991 tactacaacggtggaacacaaccaa-tctgtttaggattcgagacgatgttaccctctctaggctgaaggatgagctggatcaagtcaaccgtcaactca 8485089  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | || ||||||||  ||||||||| |||||||||||||||||||||||||| ||||||||    
T  8485090 accacaaagacacgaggagggtggtcggacttgaatataaatgtccattgtccgactcagccggatctcttcgctttagccggat 8485174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 21978454 - 21978631
Alignment:
Q  3 ctacaacggtggaacaccaccctgtctgtttaggat-tcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaa 101  Q
    ||||||||||||||||||||||| ||||||||| || | |  || |||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||    
T  21978454 ctacaacggtggaacaccaccctatctgtttagaatattgcaacgatgtcaccctctcccgactaaaggatgagctggatcaaatcaaccgtcaactcaa 21978553  T
Q  102 ccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 179  Q
    || || ||||| ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  21978554 ccgcagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcag 21978631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 22000885 - 22001062
Alignment:
Q  3 ctacaacggtggaacaccaccctgtctgtttaggat-tcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaa 101  Q
    ||||||||||||||||||||||| ||||||||| || | |  || |||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||    
T  22000885 ctacaacggtggaacaccaccctatctgtttagaatattgcaacgatgtcaccctctcccgactaaaggatgagctggatcaaatcaaccgtcaactcaa 22000984  T
Q  102 ccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 179  Q
    || || ||||| ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22000985 ccgcagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcag 22001062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 9332094 - 9331922
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    |||||||||||||||  |||||||  | |||||||||||||  || |||||||||||||||| ||||||||  | ||||||||||||||||||||||| |    
T  9332094 tactacaacggtggagaaccaccccatttgtttaggattcgcaacgatgtcaccctctccgggctgaaggaccagctggatcaaatcaaccgtcaactca 9331995  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcg 173  Q
    || ||| ||||| ||||||||||| | | ||||||||| |||||||||| ||||||||||||||||| |||||    
T  9331994 actacagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatcacttcg 9331922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 18877587 - 18877422
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    |||||||||||||||||| |||||  ||||||||||||| |  || || ||| ||||||| | || |||||||| |||||||||||||||||            
T  18877587 tactacaacggtggaacatcaccccatctgtttaggatttgcaacgatatcatcctctcccggctaaaggatgagctggatcaaatcaaccg-------- 18877496  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttca 178  Q
        || ||||| ||||||||||| | | ||| ||||| |||||||||| ||||||||||||||||| ||| ||||||    
T  18877495 ----cagagacacgaggagggtggtcggtgttaaatatcgatgtccattttccgactcagccggatcgctttgcttca 18877422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 24832314 - 24832144
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||| |||||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  24832314 tactacaacagtggaacagcaccccatctgtttaggattcgagacaatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactca 24832215  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctctt 171  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||    
T  24832214 accacaaagacatgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctctt 24832144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 10298 - 10478
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||||||||||  ||||||||||| |||||||||||||||| |||||| |    
T  10298 tactacaacggtggaacaccaccccatctattttggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccatcaactca 10397  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagcc 181  Q
    |||||||||||| ||||||||||| | ||||||||||| ||||||  || |||||||||  || |||||||||||||||||    
T  10398 accacaaagacacgaggagggtggtcggagttgaatatcgatgtctgttgtccgactcaatcgtatctcttcgcttcagcc 10478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 41836194 - 41836057
Alignment:
Q  48 tgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcca 147  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||||||| ||||| ||||||||||| | | ||||||||| ||  ||||    
T  41836194 tgtcaccctcttcgggctgaaggatgagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggtcggtgttgaatatcgaattcca 41836095  T
Q  148 ttatccgactcagccggatctcttcgcttcagccggat 185  Q
    || ||||| |||||| ||||||| ||||||||||||||    
T  41836094 ttgtccgaatcagccagatctctacgcttcagccggat 41836057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 16796064 - 16796165
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 146  Q
    |||||||||||||||   |||||||| | ||||||||||||||| ||||||| ||||||| ||||| ||||||||||||| | ||||| |||||| ||||    
T  16796064 atgtcaccctctccgagttgaaggattagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggacggtgttgagtattgacgtcc 16796163  T
Q  147 at 148  Q
    ||    
T  16796164 at 16796165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 12191461 - 12191382
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 126  Q
    |||||||| |||||||  | || ||| | ||||||||||||||||||||| | |||||||||||||  ||||||||||||    
T  12191461 atgtcaccttctccgggttaaatgatcagctggatcaaatcaaccgtcaattcaaccacaaagacacaaggagggtggac 12191382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 12435889 - 12435810
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 126  Q
    |||||||| |||||||  | || ||| | ||||||||||||||||||||| | |||||||||||||  ||||||||||||    
T  12435889 atgtcaccttctccgggttaaatgatcagctggatcaaatcaaccgtcaattcaaccacaaagacacaaggagggtggac 12435810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5462946 - 5463130
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||| ||| ||||||||||| |    
T  5462946 tactacaacggtggaacaccaccccatctgtttaggattctagacgatgtcaccctctccgggctgaaggatgagctggatcgaattaaccgtcaactca 5463045  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | |||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  5463046 accacaaagacacgaggagggtggtcggagtggaatatcgatgtccattgtccgactcagccggacctcttcgcttcagccggat 5463130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 15111913 - 15112094
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||  | |||||||||||| ||||||| |    
T  15111913 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagttagatcaaatcaactgtcaactca 15112012  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 182  Q
    |||||| ||||| ||||||||||| ||||||| ||||||||||| |||| ||||||| | ||||||||||||||||||||||    
T  15112013 accacagagacacgaggagggtggtcagagtttaatattgatgttcattgtccgacttaaccggatctcttcgcttcagccg 15112094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 18964898 - 18964721
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||| |||| |||||||  ||||||||||||| | ||| ||||||||||||||||  ||||||||||  |||||||||||||||||||||| |    
T  18964898 tactacaacgggggaaaaccacccaatctgtttaggatttgcgacgatgtcaccctctccgggatgaaggatgagttggatcaaatcaaccgtcaactca 18964799  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttca 178  Q
    |||||||||||| |||||||||||     |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  18964798 accacaaagacaggaggagggtggttgatgttgaatattgatgtccattgtccgactcagccggatctcttcgattca 18964721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5936903 - 5937087
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||   || |||||||||||||||| ||||||||||| |||||||||||||| |||||||| |    
T  5936903 tactacaacggtggaacaccaccccatctgtttaggattcacaacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaatcgtcaactca 5937002  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||| |  || ||||||| ||| | | ||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||    
T  5937003 accacagaagcacgaggaggttggtcggtgttgaatatcgatgtccattgtccgactcagccgaatctcttcgcttcaaccggat 5937087  T

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Target: chr2; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 34950064 - 34949880
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    |||||||||||||||||| |||||  ||||||||||||| |  || || ||||| ||||||| ||||||||||| |||||||||||||| |||||||| |    
T  34950064 tactacaacggtggaacatcaccccatctgtttaggatttgcaacgatctcaccttctccgggctgaaggatgagctggatcaaatcaatcgtcaactca 34949965  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||| ||||| ||| |||||||     ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  34949964 accacatagacacgagtagggtggttgttgttgaatatcgatgtccattgtccgactcaaccggatctcttcgcttcagccggat 34949880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 33946344 - 33946243
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 146  Q
    |||||||||||||| || |||||| | | ||||||||||||||||| ||| | ||| |||||||||   |||||||||| || ||||| ||| |||||||    
T  33946344 atgtcaccctctccagattgaagggtcagctggatcaaatcaaccgccaattcaactacaaagacacacggagggtggatagtgttgagtatcgatgtcc 33946245  T
Q  147 at 148  Q
    ||    
T  33946244 at 33946243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 2734688 - 2734623
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagaca 112  Q
    |||||||||||||| |  |||||| | | ||||||||||||||||||||||| ||| ||| |||||    
T  2734688 atgtcaccctctccaggttgaagggtcagctggatcaaatcaaccgtcaactcaactacagagaca 2734623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 41255599 - 41255518
Alignment:
Q  80 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagc 161  Q
    ||||||||||||||||| | ||||||  |||||  ||||||||||| || ||||| ||| || |||||||  ||||||||||    
T  41255599 atcaaatcaaccgtcaaatgaaccacgtagacacaaggagggtggatagtgttgagtatcgacgtccattgaccgactcagc 41255518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 42014750 - 42014798
Alignment:
Q  77 tggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtgga 125  Q
    |||||||||||||||||||||| | ||||| |||||  |||||||||||    
T  42014750 tggatcaaatcaaccgtcaactcacccacagagacacaaggagggtgga 42014798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 24854480 - 24854645
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||||||||||||| |    
T  24854480 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccgtcaactca 24854579  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggat 166  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||||||||||    
T  24854580 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggat 24854645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 6431198 - 6431362
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  6431198 tactacaacggtggaacaccaccccatctatttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactca 6431297  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccgga 165  Q
    |||||||||||| ||||||||||| |  |||||||||| |||||||||| |||||||||| ||||    
T  6431298 accacaaagacacgaggagggtggtcgaagttgaatatcgatgtccattgtccgactcagtcgga 6431362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 41614925 - 41615106
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||   || ||||||||||||||||  |||||||||| ||||||||||||||||||||||| |    
T  41614925 tactacaacggtggaacaccaccccatctgtttaggattcacaacgatgtcaccctctccgggatgaaggatgagctggatcaaatcaaccgtcaactca 41615024  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 182  Q
    ||||||||||||  |||||||||| | | ||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  41615025 accacaaagacacaaggagggtggtcggtgttgaatatcgatgtccatttcccgactcaaccggatctcttcgcttcagccg 41615106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 31470738 - 31470909
Alignment:
Q  3 ctacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaac 102  Q
    ||||||||||||||||||||||   ||||||||||||||  || |||||||||||||||  |||||||||||| |||||||||||||||||||||| |||    
T  31470738 ctacaacggtggaacaccaccccaactgtttaggattcgcaacgatgtcaccctctccgagctgaaggatgatgtggatcaaatcaaccgtcaactcaac 31470837  T
Q  103 cacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgc 174  Q
    | |||||||| ||||||||||| | | | ||||||  |||||||||| ||||||||||||||||||||||||    
T  31470838 cgcaaagacacgaggagggtggtcggtgatgaataccgatgtccattgtccgactcagccggatctcttcgc 31470909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 5342644 - 5342767
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||| ||||||| |    
T  5342644 tactacaacggtggaacaccaccccctctgtttaggattcgagacgatgtcaccctctccgggttgaaggatgaactggatcaaatcaactgtcaactca 5342743  T
Q  101 accacaaagacaagaggagggtgg 124  Q
    |||||||||||| |||||||||||    
T  5342744 accacaaagacacgaggagggtgg 5342767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 27950065 - 27949900
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||  |||| |||||||  |||||||||||||||  || |||||||||| ||||  ||||||||| | ||||||||||||||||||||||| |    
T  27950065 tactacaacgagggaaaaccaccccatctgtttaggattcgcaacgatgtcaccctttccgtgctgaaggatcagctggatcaaatcaaccgtcaactca 27949966  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggat 166  Q
    || ||| ||||| ||||| || || | | ||||||||| |||||||||| |||||||||| |||||    
T  27949965 actacagagacacgaggatggcggtcggtgttgaatatcgatgtccattgtccgactcagtcggat 27949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 10133541 - 10133656
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 146  Q
    |||||||| ||||| |  |||||||| | ||||||||||||||||| ||||| ||||||||||||| | |||||||||||   ||||| ||| ||  |||    
T  10133541 atgtcaccatctccaggttgaaggatcagctggatcaaatcaaccgccaactcaaccacaaagacacgcggagggtggacgatgttgagtatcgacatcc 10133640  T
Q  147 attatccgactcagcc 162  Q
    || | |||||||||||    
T  10133641 atcaaccgactcagcc 10133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 8241664 - 8241742
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtgga 125  Q
    |||||||||||| | |  |||||||| ||||||||||||||||||||||||| || |||| ||||| ||||| ||||||    
T  8241664 atgtcaccctctacaggttgaaggatcatctggatcaaatcaaccgtcaactcaatcacagagacacgaggatggtgga 8241742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 28443775 - 28443674
Alignment:
Q  47 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 146  Q
    |||||||| |||| ||  |||||||| | ||||||||||||||||  ||||| ||||||| ||||| | |||||||||||   ||||| ||| |||||||    
T  28443775 atgtcaccttctctgggttgaaggatcagctggatcaaatcaaccaccaactcaaccacagagacacgcggagggtggacgatgttgagtatcgatgtcc 28443676  T
Q  147 at 148  Q
    ||    
T  28443675 at 28443674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 17062 - 16878
Alignment:
Q  1 tactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaactta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||| |||||| |    
T  17062 tactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctaaaggatgagctggatcaaatcaaccttcaactca 16963  T
Q  101 accacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 185  Q
    |||||||||||| ||||||||||| | ||||||||||| |||||||||| | | ||||| ||| ||||||| |||||||| ||||    
T  16962 accacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtgcaactcaaccgaatctctttgcttcagctggat 16878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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