View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9184_high_5 (Length: 236)
Name: NF9184_high_5
Description: NF9184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9184_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 3702991 - 3702782
Alignment:
| Q |
15 |
agatccttcttaattatgtttgctattcactttttccagcttttggttctcctctattccttgattcaggtttccaacccgctttgacaagagattaacc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702991 |
agatccttcttaattatgtttgctattcactttttccagcttttggttctcctctattccttgattcaggtttccaacccgctttgacaagagattaacc |
3702892 |
T |
|
| Q |
115 |
aagtaagcaagcattgtctggtgccattgcctcggctttctttgcatatggaaaattttcctcatcaaaatagtttgataaccacaaatatgacaataat |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702891 |
aagtaagcaagcattgtctggcgccattgcctcggctttctttgcatatggaaaattttcctcatcaaaatagtttgataaccacaaatatgacaataat |
3702792 |
T |
|
| Q |
215 |
acttgatgtc |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
3702791 |
acttgatgtc |
3702782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 3714238 - 3714053
Alignment:
| Q |
31 |
tgtttgctattcacttttt-ccagcttttggttctcctctattccttgattcaggtttccaacccgctttgacaagagattaaccaagtaagcaagcatt |
129 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||| | |
|
|
| T |
3714238 |
tgtttgcaattcacttttttccagcttttggttttcctctattccttgcttcaggtttccaacccgctttgacaagagattgaccgagtaag--tgcaat |
3714141 |
T |
|
| Q |
130 |
gtctggtgccattgcctcggctttctttgcatatggaaaattttcctcatcaaaatagtttgataaccacaaatatgacaataatact |
217 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||| | |||||||||||||| | |||||||||| ||||||||| |||||||| |
|
|
| T |
3714140 |
gtctgaagccattgcctcatctttctttgcatatagaaagtcttcctcatcaaaatggcttgataaccaaaaatatgacgataatact |
3714053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 3717492 - 3717376
Alignment:
| Q |
106 |
agattaaccaagtaagcaagcattgtctggtgccattgcctcggctttctttgcatatggaaaattttcctcatcaaaatagtttgataaccacaaatat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
3717492 |
agattaaccaagtaagcaagcattgtctgacaccattgcctcggctttctttgcatatggaaaattgtcctcatcaaaatggttggataaccacaaatac |
3717393 |
T |
|
| Q |
206 |
gacaataatacttgatg |
222 |
Q |
| |
|
|| ||||||||| |||| |
|
|
| T |
3717392 |
gaaaataatactggatg |
3717376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 3706336 - 3706232
Alignment:
| Q |
15 |
agatccttcttaattatgtttgctattcactttttccagcttttggttctcctctattccttgattcaggtttccaacccgctttgacaagagattaacc |
114 |
Q |
| |
|
|||||||| || ||| | ||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3706336 |
agatccttattgattctattttctattcactttttccagcttttggatttcctctatttcttgattcaggtttccaacccgctttgacaagagattgacc |
3706237 |
T |
|
| Q |
115 |
aagta |
119 |
Q |
| |
|
|||| |
|
|
| T |
3706236 |
gagta |
3706232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 3519653 - 3519824
Alignment:
| Q |
51 |
cagcttttggttctcctctattccttgattcaggtttccaacccgctttgacaagagattaaccaagtaagcaagcattgtctggtgccattgcctcggc |
150 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| | ||||| |||||||| | |||||||| |||| | || | |||||||| | ||| |
|
|
| T |
3519653 |
cagcttttggtttccctctcccccttgattcaggtttccaatcagcttttctaagagattgagcaagtaagatagcaatatccgcagccattgcttgggc |
3519752 |
T |
|
| Q |
151 |
tttctttgcatatggaaaattttcctcatcaaaatagtttgataaccacaaatatgacaataatacttgatg |
222 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||| | |||||||||||||| ||| || |||| |||||||| |
|
|
| T |
3519753 |
tttctccgcatatggaaatttttccttatcaaagtggtttgataaccacatatacgaagataacacttgatg |
3519824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University