View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9184_low_1 (Length: 872)
Name: NF9184_low_1
Description: NF9184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9184_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 86 - 356
Target Start/End: Original strand, 14425954 - 14426224
Alignment:
| Q |
86 |
ggcttgtcagacccttggagcatatcccatacaata--caagcttataaactaggacatataaaaaattacaaagcaaaaccatattcctaagaggctac |
183 |
Q |
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| T |
14425954 |
ggcttgtcagacccttggagcatatcccatacaatatacaagctgataaactaggacatataaaaaattacaaagcaaaaccatattcctaagaggctac |
14426053 |
T |
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| Q |
184 |
aagtaaaa--gcataaagtatatatattatccttgctttgaaatgaagttagaaacctaccaaattgatttgaaactaccattcctaaatagttatcttt |
281 |
Q |
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| T |
14426054 |
aagtaaaaaagcataaagtata----ttatccttgctttgaaatgaagttagaaacctaccaaattgatttgaaactaacattcctaaataattatcttt |
14426149 |
T |
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| Q |
282 |
tatacattaaactaaagatttgaatggattggtccaagattgtggacgaacaatcgaatttgacattaacataag |
356 |
Q |
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| T |
14426150 |
tatacattaaactaaagatttgaatggattggtgcaagattgtggacgaacaatcgaatttgacattaacataag |
14426224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 421 - 615
Target Start/End: Original strand, 14426251 - 14426444
Alignment:
| Q |
421 |
atgaacttgatgtgatttagttacccaaaacaaaaacttgatgtgannnnnnnnnaggaaatacatgatgtgagggtttagagcacatatttctaatatt |
520 |
Q |
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| T |
14426251 |
atgaacttgatgtgattcagttacccaaaacaaaaacttgatgtgatttttttt-aggaaaaacatgatgtgagggtttagaacacatatttctaacatt |
14426349 |
T |
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| Q |
521 |
gtcataagaggatctaaaacctcaataatatgattaaacaaaagcaaccatcgcttgaaatgttttataaatggtttttaaatccaaatcagcag |
615 |
Q |
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| T |
14426350 |
gtcataagaggatctaaaacctcaataatatgattaaacaaaagcaaccatcgcttgaaatgttttataaatggtttttaaatccaaatcagcag |
14426444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 666 - 768
Target Start/End: Original strand, 14426494 - 14426596
Alignment:
| Q |
666 |
ttgtcccaattattcaaatcacccttttagaattccacctccagccagaacatcgaacaatcaccatgcaaataacccacttctacactgatgagcctag |
765 |
Q |
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| T |
14426494 |
ttgtcccaattattcaaatcacccttttagaattcaacctccagccagaacatcgaacaatcaccatgcaaataacctgcttctacaccgatgagcctag |
14426593 |
T |
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| Q |
766 |
aag |
768 |
Q |
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||| |
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| T |
14426594 |
aag |
14426596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 765 - 854
Target Start/End: Original strand, 14426694 - 14426783
Alignment:
| Q |
765 |
gaagggaatattctcattgttaccataggacatagatgaaggcccttgagaggcagcagcactagttggagtcccaggagcagcaaattg |
854 |
Q |
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| T |
14426694 |
gaagggaatattctcattgttgccataggacatagatgaaggcccttgagaggcagcagcactagttggagtcctaggagcagcaaattg |
14426783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 495 - 615
Target Start/End: Original strand, 14416283 - 14416403
Alignment:
| Q |
495 |
ggtttagagcacatatttctaatattgtcataagaggatctaaaacctcaataatatgattaaacaaaagcaaccatcgcttgaaatgttttataaatgg |
594 |
Q |
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||||| || |||||||||| ||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||| | ||||||||||||| ||||||| |
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| T |
14416283 |
ggtttggaacacatatttcgaatattgtcataaaaggatctaacacctccataatattattaaacaaaagcaacccttgcttgaaatgtttcataaatga |
14416382 |
T |
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| Q |
595 |
tttttaaatccaaatcagcag |
615 |
Q |
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| T |
14416383 |
tttttaaatccaaataagcag |
14416403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 14425217 - 14425298
Alignment:
| Q |
1 |
aaatttgaaagtgaagaagataactcaaatggacaagagaatgacaacaaagacctataagatatggagtcctatagtctgga |
83 |
Q |
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| T |
14425217 |
aaatttgaaagtgaagaagatagctcaaatggacaagaga-tgacaacaaagacctataagatatggagtcctatagtctgga |
14425298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 14412609 - 14412678
Alignment:
| Q |
121 |
acaagcttataaactaggacatataaaaaattacaaagcaaaaccatattcctaagaggctacaagtaaaa |
191 |
Q |
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| T |
14412609 |
acaagcttataaaccaagacataaaaaaaattacaaagc-aaaccatattcctaagagtctagaagtaaaa |
14412678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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