View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9184_low_3 (Length: 499)
Name: NF9184_low_3
Description: NF9184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9184_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 44562624 - 44563086
Alignment:
| Q |
19 |
cacagatgcccagatcacagattccgagaaacttaacaagcaagttatgacaactgaacggcatggaaacaacaatttgcaattcaaaattcgggaatca |
118 |
Q |
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| T |
44562624 |
cacagatgcccagatcacagattccgagaaacttaacaagcaagttatgacaactgaacggcatggaaacaacaatttgcaattcaaaattcgggaatca |
44562723 |
T |
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| Q |
119 |
ggacgtcaagattatattagttcaggcggtccagtcaactgagccaatcattacttggatgttatttggacgagaggttacatcaagaacttataaataa |
218 |
Q |
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| T |
44562724 |
ggacgtcaagattatattagttcaggcggtccagtcaactgagccaatcattacttggatgttatttcgacgagaggttacatcaagaacttataaataa |
44562823 |
T |
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| Q |
219 |
gctcatagcaaacaacaagtatcttaaattcacatgcaatttaatttagatgaaaacttcaataaactcatgttgaaaatactaaggcactagctagaaa |
318 |
Q |
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| T |
44562824 |
gctcatagcaaacaacaagtatcttaaattcacatgcaatttaatttagatgaaaacttcaataaactcatgttgaaaatactaaggcactagctagaaa |
44562923 |
T |
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| Q |
319 |
agtggctatgaaccatataagattatgaatcacctcctgcaaacccaaatgctttcttatactaaataaaagtagatgctacacataattgaaaactaac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44562924 |
agtggctatgaaccatataagattatgaatcacctcctgcaaacccaaatgctttcttatactaaataaaagtagatgctacacataattgaaaactaac |
44563023 |
T |
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| Q |
419 |
cataccgaaaaatatattaacataaaaaatgccgagtgatactgaccatattaaggtaattta |
481 |
Q |
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| T |
44563024 |
cataccgaaaaatatattaacataaaaaatgccgagtgatactgaccatattaaggtaattta |
44563086 |
T |
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