View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9184_low_6 (Length: 333)

Name: NF9184_low_6
Description: NF9184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9184_low_6
NF9184_low_6
[»] chr7 (8 HSPs)
chr7 (170-314)||(10881369-10881516)
chr7 (7-99)||(10881587-10881679)
chr7 (197-314)||(19473435-19473552)
chr7 (219-314)||(10880383-10880478)
chr7 (197-314)||(10598256-10598373)
chr7 (196-280)||(19473089-19473173)
chr7 (8-99)||(10880175-10880266)
chr7 (8-58)||(19473672-19473722)
[»] chr8 (4 HSPs)
chr8 (197-314)||(18615550-18615667)
chr8 (203-306)||(14198381-14198484)
chr8 (25-69)||(14198233-14198277)
chr8 (23-69)||(18615815-18615861)
[»] chr6 (2 HSPs)
chr6 (197-314)||(2482421-2482538)
chr6 (23-71)||(2482239-2482287)
[»] chr4 (4 HSPs)
chr4 (197-314)||(27107286-27107403)
chr4 (197-314)||(12631568-12631685)
chr4 (23-71)||(27107537-27107585)
chr4 (23-71)||(12631832-12631878)
[»] chr1 (4 HSPs)
chr1 (197-314)||(23271125-23271242)
chr1 (197-314)||(44679885-44680002)
chr1 (23-70)||(44680152-44680199)
chr1 (23-64)||(23271398-23271439)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 170 - 314
Target Start/End: Complemental strand, 10881516 - 10881369
Alignment:
Q  170 aacatatgcatgcttccaannnnnnngtagacatttatatctttgatga---agaagtcaccgaagattatattagttgatcaagatccatggatgaaat 266  Q
    |||||||||||||||||||       |||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10881516 aacatatgcatgcttccaatttttttgtagacatttatatctttgatgatgaagaagtcaccgaagattatattagttgattaagatccatggatgaaat 10881417  T
Q  267 aagcaatctcaaaagacttgccataaacaaaacatagtttttgcatat 314  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  10881416 aagcaatctcaaaagacttgccataagcaaaacatagtttttgcatat 10881369  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 10881679 - 10881587
Alignment:
Q  7 gtgttggtattaattgtcatggaaagactatactttttggatgcgcactcttacggaatgaaacgatacctacatttcggtggtggatgaagg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |||| |||||||||||||||||||||||    
T  10881679 gtgttggtattaattgtcatggaaagactatactttttggatgtgcacttttacagaatgaaacaatacttacatttcggtggtggatgaagg 10881587  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 19473552 - 19473435
Alignment:
Q  197 tagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaa 296  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||  | |||||||| ||||||||||| |||||||||||||||||||| | | ||||     
T  19473552 tagacatttatatctttgatgaataagttactgaagactatattaacttatcaagattcatggatgaaagaagcaatctcaaaagacttgtcgttaacat 19473453  T
Q  297 aacatagtttttgcatat 314  Q
    ||||||| ||||||||||    
T  19473452 aacatagcttttgcatat 19473435  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 314
Target Start/End: Original strand, 10880383 - 10880478
Alignment:
Q  219 agaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaaaacatagtttttgcatat 314  Q
    ||||||||||||||| |||||||  | |||||||||||||||||| | ||||||||||||||||||| | || ||| |||||||||||||||||||    
T  10880383 agaagtcaccgaagactatattaactaatcaagatccatggatgatagaagcaatctcaaaagactttctatcaactaaacatagtttttgcatat 10880478  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 10598256 - 10598373
Alignment:
Q  197 tagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaa 296  Q
    ||||| ||||||| ||||||||||||| |||| |||| |||||||  || |||| |||| ||||||||  | | ||||||||| || ||||||| |||||    
T  10598256 tagacttttatatatttgatgaagaagccaccaaagactatattaactgttcaaaatccttggatgaatgatgaaatctcaaatgaattgccatcaacaa 10598355  T
Q  297 aacatagtttttgcatat 314  Q
    ||||||||||||||||||    
T  10598356 aacatagtttttgcatat 10598373  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 19473089 - 19473173
Alignment:
Q  196 gtagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaa 280  Q
    ||||| ||||||||||||||||||||| ||||| ||||  ||||||   |||||| |||||||||||||| ||||||||||||||    
T  19473089 gtagaaatttatatctttgatgaagaaatcaccaaagacaatattaaccgatcaaaatccatggatgaaagaagcaatctcaaaa 19473173  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 10880175 - 10880266
Alignment:
Q  8 tgttggtattaattgtcatggaaagactatactttttggatgcgcactcttacggaatgaaacgatacctacatttcggtggtggatgaagg 99  Q
    ||||||||| |||  ||||| |||||||||||||||| |||| |||||||||||||||||||  | | |||||||||| | || ||||||||    
T  10880175 tgttggtatgaatattcatgaaaagactatactttttagatgtgcactcttacggaatgaaaaaacatctacatttcgttcgttgatgaagg 10880266  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 19473722 - 19473672
Alignment:
Q  8 tgttggtattaattgtcatggaaagactatactttttggatgcgcactctt 58  Q
    ||||||||||||| || ||||||||||||||||||||||||| | ||||||    
T  19473722 tgttggtattaatagttatggaaagactatactttttggatgtgtactctt 19473672  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 18615667 - 18615550
Alignment:
Q  197 tagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaa 296  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||   |||||||||| |||||||||| |||||||||||||||| ||| ||| |||||    
T  18615667 tagacatttatatctttgatgaagaagccaccgaagactatattaaccgatcaagatcaatggatgaaagaagcaatctcaaaagagttgtcatcaacaa 18615568  T
Q  297 aacatagtttttgcatat 314  Q
    |||| ||||| |||||||    
T  18615567 aacacagtttctgcatat 18615550  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 306
Target Start/End: Original strand, 14198381 - 14198484
Alignment:
Q  203 tttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaaaacata 302  Q
    ||||||||||||||||||||| |||| | || |||| ||    |||||||||||||||||||| |||||||||||||||| || ||||  | ||||||||    
T  14198381 tttatatctttgatgaagaagccaccaacgactatactaaccaatcaagatccatggatgaaagaagcaatctcaaaagagtttccatcgaaaaaacata 14198480  T
Q  303 gttt 306  Q
    ||||    
T  14198481 gttt 14198484  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 14198233 - 14198277
Alignment:
Q  25 atggaaagactatactttttggatgcgcactcttacggaatgaaa 69  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||    
T  14198233 atggaaagactatactttttggatgtgcactcttacggaacgaaa 14198277  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 18615861 - 18615815
Alignment:
Q  23 tcatggaaagactatactttttggatgcgcactcttacggaatgaaa 69  Q
    ||||||||||||  ||||||||||||| |||||||||||||| ||||    
T  18615861 tcatggaaagaccgtactttttggatgtgcactcttacggaacgaaa 18615815  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 2482421 - 2482538
Alignment:
Q  197 tagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaa 296  Q
    ||||| ||||||||||||||||||||| |||| | || |||| ||   ||||||||||||||||||||| |||||||||||||||| || ||||  ||||    
T  2482421 tagacttttatatctttgatgaagaagccaccaacgactatactaaccgatcaagatccatggatgaaagaagcaatctcaaaagagtttccatcgacaa 2482520  T
Q  297 aacatagtttttgcatat 314  Q
    |||||||||| |||||||    
T  2482521 aacatagtttctgcatat 2482538  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 2482239 - 2482287
Alignment:
Q  23 tcatggaaagactatactttttggatgcgcactcttacggaatgaaacg 71  Q
    ||||||||||||| ||||||||||||| ||||||||||| || ||||||    
T  2482239 tcatggaaagactgtactttttggatgtgcactcttacgaaacgaaacg 2482287  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 27107403 - 27107286
Alignment:
Q  197 tagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaa 296  Q
    ||||| ||||||||||||||||||||| |||| | || |||| ||   ||||||||||||||||||||| |||||||||||||||| || ||||  ||||    
T  27107403 tagacttttatatctttgatgaagaagccaccaacgactatactaaccgatcaagatccatggatgaaagaagcaatctcaaaagagtttccatcgacaa 27107304  T
Q  297 aacatagtttttgcatat 314  Q
    |||||||||| |||||||    
T  27107303 aacatagtttctgcatat 27107286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 12631685 - 12631568
Alignment:
Q  197 tagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaa 296  Q
    ||||| ||||||||||||||||| ||| ||||   || |||| ||   ||||||||||||||||||||| ||| |||||||||||| || ||||  ||||    
T  12631685 tagacttttatatctttgatgaataagccaccatcgactatactaaccgatcaagatccatggatgaaagaagtaatctcaaaagagtttccatcgacaa 12631586  T
Q  297 aacatagtttttgcatat 314  Q
    |||||||||| |||||||    
T  12631585 aacatagtttctgcatat 12631568  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 27107585 - 27107537
Alignment:
Q  23 tcatggaaagactatactttttggatgcgcactcttacggaatgaaacg 71  Q
    ||||||||||||| ||||||||||||| ||||||||||| || ||||||    
T  27107585 tcatggaaagactgtactttttggatgtgcactcttacgaaacgaaacg 27107537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 12631878 - 12631832
Alignment:
Q  23 tcatggaaagactatactttttggatgcgcactcttacggaatgaaacg 71  Q
    ||||||||||||||  ||||||||||| |||||||||||||| ||||||    
T  12631878 tcatggaaagacta--ctttttggatgtgcactcttacggaacgaaacg 12631832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 23271242 - 23271125
Alignment:
Q  197 tagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaa 296  Q
    ||||| ||||||||||||||||||||| |||| | || |||| ||   ||||||||||||||||||||| |||||||||||||||| || ||||  ||||    
T  23271242 tagacttttatatctttgatgaagaagccaccaatgactatactaaccgatcaagatccatggatgaaagaagcaatctcaaaagattttccatcgacaa 23271143  T
Q  297 aacatagtttttgcatat 314  Q
    |||||||||| |||||||    
T  23271142 aacatagtttctgcatat 23271125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 44680002 - 44679885
Alignment:
Q  197 tagacatttatatctttgatgaagaagtcaccgaagattatattagttgatcaagatccatggatgaaataagcaatctcaaaagacttgccataaacaa 296  Q
    ||||| ||||||||||||||||||||| |||| | || |||| ||   ||||||||||||||||||||| |||||||||||||||| || ||||  ||||    
T  44680002 tagacttttatatctttgatgaagaagccaccaacgactatactaaccgatcaagatccatggatgaaagaagcaatctcaaaagagtttccatcgacaa 44679903  T
Q  297 aacatagtttttgcatat 314  Q
    |||||||||| |||||||    
T  44679902 aacatagtttctgcatat 44679885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 44680199 - 44680152
Alignment:
Q  23 tcatggaaagactatactttttggatgcgcactcttacggaatgaaac 70  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  44680199 tcatggaaagactatactttttggatgtgcactcttacggaacgaaac 44680152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 23271439 - 23271398
Alignment:
Q  23 tcatggaaagactatactttttggatgcgcactcttacggaa 64  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  23271439 tcatggaaagactatactttttggatgtgcactcttacggaa 23271398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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