View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9184_low_8 (Length: 331)

Name: NF9184_low_8
Description: NF9184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9184_low_8
NF9184_low_8
[»] chr3 (9 HSPs)
chr3 (19-315)||(17725448-17725744)
chr3 (19-315)||(19026677-19026973)
chr3 (170-250)||(18017927-18018007)
chr3 (160-237)||(24496413-24496488)
chr3 (210-255)||(18871951-18871996)
chr3 (161-200)||(19377527-19377566)
chr3 (196-255)||(19466247-19466306)
chr3 (210-255)||(18148709-18148754)
chr3 (210-255)||(19395105-19395150)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 17725744 - 17725448
Alignment:
Q  19 attataccactattgttgttgagttcatctttcacttgttgtaatgtttatgnnnnnnnnattgcacttattataatgtttttgtttactaatgcattta 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  17725744 attataccactattgttgttgagttcatctgtcacttgttgtaatgtttatgttttttttattgcacttattataatgtttttgtttactaatgcattta 17725645  T
Q  119 tgttgtcaaatgttctatgcatctttctcattaatttaattggttttgtgtagaaagtggattacttctttttattatctctcaatatgtcagtttatgc 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17725644 tgttgtcaaatgttctatgcatctttgtcattaatttaattggttttgtgtagaaagtggattacttctttttatgatctctcaatatgtcagtttatgc 17725545  T
Q  219 agatggttgtagaataagagtttgtgtagaaactttgatatgcagtagaaaagaaaaacctaatattttcacatcaggaacttgctatgtgtttttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17725544 agatggttgtagaataagagtttgtgtagaaactttgatatgcagtagaaaagaaaaacctaatattttcacatcaggaacttgctatgtgtttttg 17725448  T

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Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 19026973 - 19026677
Alignment:
Q  19 attataccactattgttgttgagttcatctttcacttgttgtaatgtttatgnnnnnnnnattgcacttattataatgtttttgtttactaatgcattta 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  19026973 attataccactattgttgttgagttcatctgtcacttgttgtaatgtttatgttttttttattgcacttattataatgtttttgtttactaatgcattta 19026874  T
Q  119 tgttgtcaaatgttctatgcatctttctcattaatttaattggttttgtgtagaaagtggattacttctttttattatctctcaatatgtcagtttatgc 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19026873 tgttgtcaaatgttctatgcatctttgtcattaatttaattggttttgtgtagaaagtggattacttctttttatgatctctcaatatgtcagtttatgc 19026774  T
Q  219 agatggttgtagaataagagtttgtgtagaaactttgatatgcagtagaaaagaaaaacctaatattttcacatcaggaacttgctatgtgtttttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19026773 agatggttgtagaataagagtttgtgtagaaactttgatatgcagtagaaaagaaaaacctaatattttcacatcaggaacttgctatgtgtttttg 19026677  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 18017927 - 18018007
Alignment:
Q  170 agaaagtggattacttctttttattatctctcaatatgtcagtttatgcagatggttgtagaataagagtttgtgtagaaa 250  Q
    |||||||||||||||||||||||||||||||| |||| |||| ||||  |||||||||||||||| |||||| ||||||||    
T  18017927 agaaagtggattacttctttttattatctctctatatatcagattatttagatggttgtagaatatgagtttatgtagaaa 18018007  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 24496488 - 24496413
Alignment:
Q  160 ggttttgtgtagaaagtggattacttctttttattatctctcaatatgtcagtttatgcagatggttgtagaataaga 237  Q
    ||||||||| |||||||||| ||||||||| |||||||||||  ||| | || ||||||||||||||| |||||||||    
T  24496488 ggttttgtggagaaagtggaatacttctttctattatctctc--tatattaggttatgcagatggttgcagaataaga 24496413  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 18871996 - 18871951
Alignment:
Q  210 agtttatgcagatggttgtagaataagagtttgtgtagaaactttg 255  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  18871996 agtttatgcagatggtttaagaataagagtttgtgtagaaactttg 18871951  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 19377527 - 19377566
Alignment:
Q  161 gttttgtgtagaaagtggattacttctttttattatctct 200  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  19377527 gttttgtggagaaagtggattacttctttttattatctct 19377566  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 19466247 - 19466306
Alignment:
Q  196 tctctcaatatgtcagtttatgcagatggttgtagaataagagtttgtgtagaaactttg 255  Q
    |||||| |||| | || |||||||||| |||| |||||||||||||||||||||||||||    
T  19466247 tctctctatatattaggttatgcagatagttgcagaataagagtttgtgtagaaactttg 19466306  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 18148709 - 18148754
Alignment:
Q  210 agtttatgcagatggttgtagaataagagtttgtgtagaaactttg 255  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  18148709 agtttatgcagatagttgcagaataagagtttgtgtagaaattttg 18148754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 19395105 - 19395150
Alignment:
Q  210 agtttatgcagatggttgtagaataagagtttgtgtagaaactttg 255  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||    
T  19395105 agtttatgcagatggtttaagaataagagtttgtttagaaactttg 19395150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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